Individual skill
deepspot-m
Transcriptome-wide virtual spatial transcriptomics from H&E histology with DeepSpot-M. Scores a 224x224 tile and returns per-gene log1p-CPM values for any HGNC symbols you ask for, with a CSV, a report and a reproducibility bundle.
skills/deepspot-m/SKILL.md
Source commit df1d8ffe9facdba2b89f608569fea9daaa1fc92f
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 3, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 1,176
- Repository last updated
- Nov 6, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- spatial-transcriptomics Declared skill tag
- histology Declared skill tag
- gene-expression Declared skill tag
- foundation-model Declared skill tag
- digital-pathology Declared skill tag
- h-and-e Declared skill tag
- engineering Derived category
Files and excerpt
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Browse files
SKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesSKILL.mdcore · 26,900 bytesdeepspot_m.pyruns · 37,597 bytesexamples/demo_expression.jsonasset · 527 bytesexamples/demo_tile.pngasset · 82,302 bytesrequirements.txtdoc · 364 bytestests/test_deepspot_m.pyruns · 37,303 bytes
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