Individual skill
deidentify
Use when clinical data may contain PHI and must be de-identified before any LLM-assisted analysis. A local Python script (no network or AI calls) detects identifiers with regex and heuristics in 12 country locale packs, with interactive terminal review.
skills/deidentify/SKILL.md
Source commit cc462bc2069064b557c2fea12a1f83ed1fe67f66
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
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- Observed behavior
- Not checked yet
- Last checked
- Nov 7, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 373
- Repository last updated
- Nov 2, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- biostatistics Repository topic
- claude-code Repository topic
- claude-skills Repository topic
- clinical-research Repository topic
- diagnostic-accuracy Repository topic
- literature-review Repository topic
- manuscript Repository topic
- medical-ai Repository topic
- medical-research Repository topic
- meta-analysis Repository topic
- data Derived category
Files and excerpt
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Browse files
SKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesSKILL.mdcore · 15,087 bytesdeidentify.pyruns · 74,282 byteslocales/_template.jsonasset · 963 byteslocales/au.jsonasset · 1,197 byteslocales/ca.jsonasset · 1,288 byteslocales/cn.jsonasset · 1,411 byteslocales/de.jsonasset · 1,506 byteslocales/es.jsonasset · 2,974 byteslocales/fr.jsonasset · 1,561 byteslocales/in.jsonasset · 1,470 byteslocales/it.jsonasset · 2,132 byteslocales/jp.jsonasset · 1,609 byteslocales/kr.jsonasset · 1,628 byteslocales/uk.jsonasset · 1,368 byteslocales/us.jsonasset · 1,445 bytesreferences/date_shift_guide.mddoc · 4,097 bytesreferences/hipaa_18_identifiers.mddoc · 3,061 bytesreferences/korean_phi_patterns.mddoc · 4,182 bytesskill.ymlasset · 1,872 bytestests/README.mddoc · 2,395 bytestests/test_clean.csvasset · 632 bytestests/test_deidentify_scan.shruns · 54,415 bytestests/test_edge_cases.csvasset · 477 bytestests/test_phi_italian.csvasset · 411 bytestests/test_phi_korean.csvasset · 1,573 bytestests/test_phi_spanish.csvasset · 968 bytes
Read excerpt
# De-identification Skill
You are guiding a medical researcher through data de-identification. The actual
de-identification is performed by a **standalone Python script** that runs WITHOUT
any LLM. Your role is to explain, guide, and verify — not to see or process raw
PHI data.
## Critical Safety Rules
1. **NEVER ask the user to paste, show, or upload raw data containing PHI.**
The script processes data locally. You never need to see patient-level data.
2. **NEVER read or display the mapping file contents.** It contains original PHI values.
3. **You may read** the scan and reviewed reports (column classifications; no cell values)
and the audit log (keyed hashes; no original values). Read the de-identified output only