Individual skill

motif-analysis

Guide for de novo and known motif enrichment analysis of ENCODE ChIP-seq and ATAC-seq peaks using HOMER and MEME Suite. Use when users need to discover TF binding motifs in peaks, validate ChIP-seq targets, or find co-binding partners. Trigger on: motif analysis, HOMER, MEME, de novo motif, motif enrichment, findMotifsGenome, AME, MEME-ChIP, known motif, TF binding motif, co-factor, motif discovery.

skills/motif-analysis/SKILL.md

Source commit 36836c8725fd4d20d9c851ce314f5151aea5f57c

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Yes

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Observed behavior

Network or broad shell

Last checked

Nov 6, 2026

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