#538 by GitHub stars
huang-sir1/radiology-skills
Audit imaging acquisition, reconstruction, series eligibility, quantitative transforms and protocol drift; not model training.
History
Review weekly changes to SKILL.md before updating. Dates mark the weeks in which we observed each version; checks apply to the recorded commits.
View weekly changes
radiology-skills/skills/radiology-acquisition-qc/SKILL.md
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radiology-skills/skills/radiology-annotation/SKILL.md
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radiology-skills/skills/radiology-bibliometrics/SKILL.md
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radiology-skills/skills/radiology-citation/SKILL.md
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radiology-skills/skills/radiology-clinical-domain/SKILL.md
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radiology-skills/skills/radiology-consensus-guideline/SKILL.md
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radiology-skills/skills/radiology-data/SKILL.md
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radiology-skills/skills/radiology-deep-learning/SKILL.md
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radiology-skills/skills/radiology-design/SKILL.md
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radiology-skills/skills/radiology-dissemination/SKILL.md
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radiology-skills/skills/radiology-ethics/SKILL.md
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radiology-skills/skills/radiology-experiment-design/SKILL.md
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radiology-skills/skills/radiology-figure/SKILL.md
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radiology-skills/skills/radiology-frontier/SKILL.md
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radiology-skills/skills/radiology-grant/SKILL.md
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radiology-skills/skills/radiology-health-economics/SKILL.md
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radiology-skills/skills/radiology-innovation-transfer/SKILL.md
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radiology-skills/skills/radiology-journal/SKILL.md
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radiology-skills/skills/radiology-method-evaluation/SKILL.md
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radiology-skills/skills/radiology-paper2ppt/SKILL.md
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radiology-skills/skills/radiology-pipeline/SKILL.md
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radiology-skills/skills/radiology-polishing/SKILL.md
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radiology-skills/skills/radiology-prereview/SKILL.md
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radiology-skills/skills/radiology-qualitative-mixed-methods/SKILL.md
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radiology-skills/skills/radiology-radiogenomics/SKILL.md
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radiology-skills/skills/radiology-radiomics/SKILL.md
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radiology-skills/skills/radiology-reader/SKILL.md
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radiology-skills/skills/radiology-reporting/SKILL.md
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radiology-skills/skills/radiology-reproducibility/SKILL.md
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radiology-skills/skills/radiology-research-integrity/SKILL.md
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radiology-skills/skills/radiology-research-ops/SKILL.md
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radiology-skills/skills/radiology-response/SKILL.md
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radiology-skills/skills/radiology-search/SKILL.md
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radiology-skills/skills/radiology-stats/SKILL.md
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radiology-skills/skills/radiology-submission/SKILL.md
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radiology-skills/skills/radiology-systematic-review/SKILL.md
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radiology-skills/skills/radiology-table/SKILL.md
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radiology-skills/skills/radiology-transcriptomics-analysis/SKILL.md
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radiology-skills/skills/radiology-translation/SKILL.md
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radiology-skills/skills/radiology-writing/SKILL.md
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View on GitHubAdd to my skills
Verified commit aaa0fe621c404d3146333e0e1a2a22ed51f415fe
git clone --filter=blob:none --no-checkout https://github.com/huang-sir1/radiology-skills.git .hotskills/huang-sir1-radiology-skills && git -C .hotskills/huang-sir1-radiology-skills checkout --detach aaa0fe621c404d3146333e0e1a2a22ed51f415fe
# Copy each selected skill directory from .hotskills/huang-sir1-radiology-skills into .claude/skills/<skill-name>/2kGitHub stars
-5stars in 7 days
40skills in this repository
0commits in 30 days
Heat
0.7- Star growth, last 7 daysAhead of 1% of tracked repositories
- Star growth, last 24 hoursAhead of 5% of tracked repositories
- Rank movement, last 7 daysAhead of 29% of tracked repositories
- Commits, last 30 daysAhead of 0% of tracked repositories
- Accounts asking about it through MCP, last 7 daysNot available
- Hot votes this weekAhead of 0% of tracked repositories
Heat never changes the order by stars, and sponsorship never touches it. How heat works
Stars over time
Individual skills in this repository
- radiology-acquisition-qc
radiology-skills/skills/radiology-acquisition-qc - radiology-annotation
radiology-skills/skills/radiology-annotation - radiology-bibliometrics
radiology-skills/skills/radiology-bibliometrics - radiology-citation
radiology-skills/skills/radiology-citation - radiology-clinical-domain
radiology-skills/skills/radiology-clinical-domain - radiology-consensus-guideline
radiology-skills/skills/radiology-consensus-guideline - radiology-data
radiology-skills/skills/radiology-data - radiology-deep-learning
radiology-skills/skills/radiology-deep-learning - radiology-design
radiology-skills/skills/radiology-design - radiology-dissemination
radiology-skills/skills/radiology-dissemination - radiology-ethics
radiology-skills/skills/radiology-ethics - radiology-experiment-design
radiology-skills/skills/radiology-experiment-design - radiology-figure
radiology-skills/skills/radiology-figure - radiology-frontier
radiology-skills/skills/radiology-frontier - radiology-grant
radiology-skills/skills/radiology-grant - radiology-health-economics
radiology-skills/skills/radiology-health-economics - radiology-innovation-transfer
radiology-skills/skills/radiology-innovation-transfer - radiology-journal
radiology-skills/skills/radiology-journal - radiology-method-evaluation
radiology-skills/skills/radiology-method-evaluation - radiology-paper2ppt
radiology-skills/skills/radiology-paper2ppt - radiology-pipeline
radiology-skills/skills/radiology-pipeline - radiology-polishing
radiology-skills/skills/radiology-polishing - radiology-prereview
radiology-skills/skills/radiology-prereview - radiology-qualitative-mixed-methods
radiology-skills/skills/radiology-qualitative-mixed-methods - radiology-radiogenomics
radiology-skills/skills/radiology-radiogenomics - radiology-radiomics
radiology-skills/skills/radiology-radiomics - radiology-reader
radiology-skills/skills/radiology-reader - radiology-reporting
radiology-skills/skills/radiology-reporting - radiology-reproducibility
radiology-skills/skills/radiology-reproducibility - radiology-research-integrity
radiology-skills/skills/radiology-research-integrity - radiology-research-ops
radiology-skills/skills/radiology-research-ops - radiology-response
radiology-skills/skills/radiology-response - radiology-search
radiology-skills/skills/radiology-search - radiology-stats
radiology-skills/skills/radiology-stats - radiology-submission
radiology-skills/skills/radiology-submission - radiology-systematic-review
radiology-skills/skills/radiology-systematic-review - radiology-table
radiology-skills/skills/radiology-table - radiology-transcriptomics-analysis
radiology-skills/skills/radiology-transcriptomics-analysis - radiology-translation
radiology-skills/skills/radiology-translation - radiology-writing
radiology-skills/skills/radiology-writing
How it works
radiology-acquisition-qc
When your agent uses it
Audit imaging acquisition, reconstruction, series eligibility, quantitative transforms and protocol drift; not model training.
What it loads into context
Frontmatter
31 tokensAlways available to the agent
SKILL.md
2,359 tokensWhen the skill is activated
Reference documents
16,535 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- When to use
- Ownership
- Modes
- Progressive routing
- Required routing workflow
- Claim ceiling
- Handoffs
- Output contract
- Boundaries
Scripts executed separately
scripts/validate_acquisition_qc_skill.ps1
Files
../../.claude-plugin/marketplace.jsonasset481 bytes../../.claude-plugin/plugin.jsonasset426 bytesSKILL.mdcore11,401 bytesSKILL.mdcore11,401 bytesSKILL.mdcore11,401 bytesagents/openai.yamlasset353 bytesreferences/ct-acquisition-reconstruction.mddoc8,932 bytesreferences/diffusion-tensor-tractography.mddoc5,315 bytesreferences/functional-mri.mddoc5,392 bytesreferences/mr-acquisition-reconstruction.mddoc10,461 bytesreferences/mr-spectroscopy.mddoc5,398 bytesreferences/pet-spect-acquisition-quantification.mddoc9,052 bytesreferences/phantom-test-retest-protocol-shift.mddoc11,459 bytesreferences/projection-radiography-mammo-dbt.mddoc9,145 bytesreferences/ultrasound-ceus-elastography.mddoc8,927 bytesscripts/validate_acquisition_qc_skill.ps1runs6,384 bytestemplates/imaging-measurement-passport.mddoc6,910 bytestests/routing-cases.jsonasset10,867 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-annotation
When your agent uses it
Design/audit imaging truth, readers, ROI geometry, reproducibility and label noise; not model training.
What it loads into context
Frontmatter
31 tokensAlways available to the agent
SKILL.md
1,594 tokensWhen the skill is activated
Reference documents
7,820 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Scripts executed separately
tests/test_mask_geometry_semantics.py
Files
README.mddoc2,145 bytesSKILL.mdcore6,939 bytesagents/openai.yamlasset253 bytesreferences/label-ontology-and-reference-standard.mddoc7,195 bytesreferences/lesion-selection.mddoc2,334 bytesreferences/longitudinal-lesion-and-exam-linkage.mddoc6,275 bytesreferences/mask-geometry.mddoc7,001 bytesreferences/noisy-weak-and-report-derived-labels.mddoc6,690 bytesreferences/reader-protocol.mddoc2,867 bytesreferences/reproducibility-qc.mddoc2,529 bytestests/test_mask_geometry_semantics.pyruns4,102 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-bibliometrics
When your agent uses it
Build reproducible radiology bibliometrics with corpus identity, disambiguation and sensitivity; not reviews.
What it loads into context
Frontmatter
33 tokensAlways available to the agent
SKILL.md
1,586 tokensWhen the skill is activated
Reference documents
2,539 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Input passport and STOP gates
- Route by mode
- Radiology-specific controls
- Workflow and output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_bibliometrics_skill.ps1
Files
SKILL.mdcore8,002 bytesSKILL.mdcore8,002 bytesSKILL.mdcore8,002 bytesSKILL.mdcore8,002 bytesagents/openai.yamlasset273 bytesreferences/analysis-contract-and-methods.mddoc3,352 bytesreferences/responsible-interpretation.mddoc2,835 bytesreferences/source-registry.mddoc3,333 bytesscripts/validate_bibliometrics_skill.ps1runs6,533 bytestemplates/bibliometric-analysis-and-claim-ledger.mddoc1,267 bytestemplates/corpus-passport.mddoc1,485 bytestests/routing-cases.jsonasset6,222 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-citation
When your agent uses it
Verify claim-level sources and DOI/PMID; export checked citations. Not discovery or evidence synthesis.
What it loads into context
Frontmatter
30 tokensAlways available to the agent
SKILL.md
984 tokensWhen the skill is activated
Reference documents
3,267 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Handoffs
Files
README.mddoc1,586 bytesSKILL.mdcore4,304 bytesSKILL.mdcore4,304 bytesagents/openai.yamlasset248 bytesreferences/claim-verification-gate.mddoc5,914 bytesreferences/export-formats.mddoc2,169 bytesreferences/radiology-journal-scope.mddoc1,851 bytesreferences/reference-integrity-audit.mddoc2,354 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-clinical-domain
When your agent uses it
Set disease pathways, endpoints, reference standards and treatment timelines; not patient care.
What it loads into context
Frontmatter
28 tokensAlways available to the agent
SKILL.md
2,374 tokensWhen the skill is activated
Reference documents
25,909 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- Choose the mode
- Required workflow
- Scientific red lines
- Output contract
- Handoffs and non-ownership
- Boundary
Scripts executed separately
scripts/validate_clinical_domain_skill.ps1
Files
SKILL.mdcore11,762 bytesSKILL.mdcore11,762 bytesSKILL.mdcore11,762 bytesSKILL.mdcore11,762 bytesagents/openai.yamlasset374 bytesreferences/acute-emergency-imaging-research.mddoc18,071 bytesreferences/clinical-domain-routing.mddoc13,377 bytesreferences/domain-playbooks.mddoc29,059 bytesreferences/musculoskeletal-imaging-research.mddoc20,253 bytesreferences/nuclear-medicine-theranostics-research.mddoc25,334 bytesreferences/pediatric-imaging-research.mddoc22,498 bytesscripts/validate_clinical_domain_skill.ps1runs5,520 bytestemplates/live-standard-receipt.mddoc1,991 bytestemplates/local-clinical-expert-profile.mddoc2,500 bytestests/routing-cases.jsonasset8,421 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-consensus-guideline
When your agent uses it
Design/audit consensus and evidence-to-recommendation products; not review synthesis or endorsement.
What it loads into context
Frontmatter
30 tokensAlways available to the agent
SKILL.md
2,069 tokensWhen the skill is activated
Reference documents
3,940 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Choose the product and mode
- Input passport
- Core evidence and recommendation states
- Required workflow
- Stop and escalation gates
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_consensus_guideline_skill.ps1
Files
SKILL.mdcore10,192 bytesagents/openai.yamlasset329 bytesreferences/evidence-to-recommendation.mddoc4,789 bytesreferences/formal-consensus-methods.mddoc3,608 bytesreferences/radiology-guidance-lifecycle.mddoc4,552 bytesreferences/source-registry.mddoc2,682 bytesscripts/validate_consensus_guideline_skill.ps1runs6,631 bytestemplates/consensus-guideline-protocol.mddoc2,001 bytestemplates/recommendation-etd-ledger.mddoc1,818 bytestests/routing-cases.jsonasset7,184 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-data
When your agent uses it
Plan/audit imaging provenance, DICOM de-identification, sharing, repositories and retention; not ethics approval.
What it loads into context
Frontmatter
31 tokensAlways available to the agent
SKILL.md
1,948 tokensWhen the skill is activated
Reference documents
13,214 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Handoffs
Scripts executed separately
tests/test_dicom_deidentification_contracts.py
Files
README.mddoc2,311 bytesSKILL.mdcore8,919 bytesagents/openai.yamlasset262 bytesreferences/ai-radiogenomics-public-resources.mddoc3,345 bytesreferences/availability-and-fair.mddoc4,935 bytesreferences/chinese-clinical-text-abstraction.mddoc4,414 bytesreferences/cohort-assembly-and-id-reconciliation.mddoc9,600 bytesreferences/data-dictionary-spec.mddoc4,410 bytesreferences/data-lifecycle-management-plan.mddoc6,391 bytesreferences/dicom-deidentification.mddoc9,619 bytesreferences/outcome-and-followup-data.mddoc8,519 bytesreferences/repositories.mddoc2,536 bytestemplates/data-lifecycle-plan.mddoc2,093 bytestests/test_dicom_deidentification_contracts.pyruns8,841 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-deep-learning
When your agent uses it
Design/train/audit imaging DL pipelines, splits, tuning and validation; not deployment studies.
What it loads into context
Frontmatter
29 tokensAlways available to the agent
SKILL.md
2,234 tokensWhen the skill is activated
Reference documents
8,471 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Scripts executed separately
tests/test_foundation_boundary_contracts.py
Files
README.mddoc2,897 bytesSKILL.mdcore10,073 bytesagents/openai.yamlasset276 bytesreferences/architecture-choice.mddoc2,306 bytesreferences/dl-leakage-audit.mddoc2,659 bytesreferences/experiment-and-model-card.mddoc2,317 bytesreferences/foundation-model-data-genealogy-and-privacy.mddoc5,891 bytesreferences/foundation-models-trustworthy-ai.mddoc5,127 bytesreferences/interpretability-uncertainty.mddoc11,861 bytesreferences/multimodal-inputs.mddoc2,439 bytesreferences/training-protocol.mddoc3,281 bytestests/test_foundation_boundary_contracts.pyruns2,751 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-design
When your agent uses it
Lock study feasibility, population, estimand, imaging task and validation; not novelty scanning or execution. CN: 可行性、课题设计、样本量、外部验证
What it loads into context
Frontmatter
47 tokensAlways available to the agent
SKILL.md
3,129 tokensWhen the skill is activated
Reference documents
29,414 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Scripts executed separately
tests/test_methodology_p1_contracts.py
Files
README.mddoc2,684 bytesSKILL.mdcore14,234 bytesSKILL.mdcore14,234 bytesagents/openai.yamlasset258 bytesreferences/ai-radiogenomics-12-24-roadmap.mddoc5,086 bytesreferences/endpoints-and-estimands.mddoc4,621 bytesreferences/feasibility-triage.mddoc6,135 bytesreferences/modeling-route-decision.mddoc4,685 bytesreferences/primary-imaging-study-protocol-and-preregistration.mddoc11,080 bytesreferences/registered-reports-ppi-and-equity.mddoc6,744 bytesreferences/study-blueprints.mddoc6,133 bytesreferences/task-contract-router.mddoc3,091 bytesreferences/tasks/detection-localization.mddoc7,841 bytesreferences/tasks/diagnosis-triage.mddoc6,371 bytesreferences/tasks/prognosis-risk.mddoc7,243 bytesreferences/tasks/reconstruction-enhancement.mddoc6,885 bytesreferences/tasks/report-generation-vlm.mddoc6,810 bytesreferences/tasks/response-longitudinal.mddoc6,986 bytesreferences/tasks/segmentation-quantification.mddoc7,110 bytesreferences/tasks/synthetic-imaging-generation.mddoc6,135 bytesreferences/validation-strategy.mddoc8,815 bytesreferences/weak-result-pivot.mddoc5,094 bytestemplates/imaging-statistical-analysis-plan.mddoc10,659 bytestemplates/imaging-study-protocol.mddoc9,127 bytestemplates/ppi-equity-decision-ledger.mddoc1,641 bytestests/test_methodology_p1_contracts.pyruns2,461 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-dissemination
When your agent uses it
Create traceable posters, conference abstracts, summaries and media; not papers, decks or figures.
What it loads into context
Frontmatter
31 tokensAlways available to the agent
SKILL.md
1,691 tokensWhen the skill is activated
Reference documents
2,877 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Input passport
- Route by mode
- STOP gates
- Workflow and output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_dissemination_skill.ps1
Files
SKILL.mdcore8,336 bytesSKILL.mdcore8,336 bytesSKILL.mdcore8,336 bytesSKILL.mdcore8,336 bytesSKILL.mdcore8,336 bytesSKILL.mdcore8,336 bytesagents/openai.yamlasset279 bytesreferences/modes-and-audience-actions.mddoc4,839 bytesreferences/rights-privacy-accessibility.mddoc2,662 bytesreferences/source-registry.mddoc3,796 bytesscripts/validate_dissemination_skill.ps1runs6,885 bytestemplates/claim-source-ledger.mddoc916 bytestemplates/dissemination-brief.mddoc1,291 bytestests/routing-cases.jsonasset7,206 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-ethics
When your agent uses it
Audit IRB, consent, privacy, IACUC/IBC, biosafety and dual use; not logistics or lab execution.
What it loads into context
Frontmatter
37 tokensAlways available to the agent
SKILL.md
2,184 tokensWhen the skill is activated
Reference documents
9,226 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable stance
- Choose an operating mode
- Route before writing
- Evidence states and verdicts
- Branch resources
- Workflow
- Output contract
- Handoffs and boundaries
Scripts executed separately
scripts/validate_ethics_skill.ps1
Files
README.mddoc2,873 bytesSKILL.mdcore10,598 bytesSKILL.mdcore10,598 bytesagents/openai.yamlasset387 bytesreferences/animal-welfare-review.mddoc5,277 bytesreferences/approval-consent.mddoc5,889 bytesreferences/biosafety-biosecurity-review.mddoc6,534 bytesreferences/ethics-routing-and-stop-gates.mddoc6,741 bytesreferences/governance-sharing.mddoc2,763 bytesreferences/reidentification-risk.mddoc5,422 bytesscripts/validate_ethics_skill.ps1runs5,358 bytestemplates/local-ethics-oversight-profile.mddoc2,986 bytestemplates/research-ethics-governance-matrix.mddoc5,095 bytestests/routing-cases.jsonasset9,235 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-experiment-design
When your agent uses it
Design/audit tissue, cell, organoid, animal, perturbation and rescue validation; not physical SOP execution.
What it loads into context
Frontmatter
34 tokensAlways available to the agent
SKILL.md
2,861 tokensWhen the skill is activated
Reference documents
8,365 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- Choose the entry mode
- Minimal intake
- Required workflow
- Quality gates
- Assay and system routing
- Scientific red lines
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_experiment_design_skill.ps1
Files
../radiology-ethics/templates/research-ethics-governance-matrix.mddoc5,095 bytesSKILL.mdcore14,366 bytesSKILL.mdcore14,366 bytesagents/openai.yamlasset352 bytesreferences/assay-control-matrix.mddoc8,979 bytesreferences/mechanism-experiment-workflow.mddoc13,279 bytesscripts/validate_experiment_design_skill.ps1runs4,767 bytestemplates/failure-decision-log.mddoc1,623 bytestemplates/local-assay-capability-profile.mddoc3,232 bytestemplates/local-mechanism-validation-experience-registry.mddoc2,874 bytestemplates/mechanism-experiment-plan.mddoc4,504 bytestests/routing-cases.jsonasset4,647 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-figure
When your agent uses it
Create/audit publication plots, visual abstracts and imaging panels with render QA; not tables or decks. CN: 统计图、ROC、森林图、影像图版
What it loads into context
Frontmatter
46 tokensAlways available to the agent
SKILL.md
2,414 tokensWhen the skill is activated
Reference documents
15,752 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- QA checklist (run before returning)
- Handoffs
Scripts executed separately
scripts/audit_figure_export.pytests/test_audit_figure_export.py
Files
README.mddoc3,144 bytesSKILL.mdcore10,432 bytesSKILL.mdcore10,432 bytesagents/openai.yamlasset259 bytesreferences/api.mddoc11,963 bytesreferences/backend-and-geometry-qa.mddoc2,638 bytesreferences/chart-types.mddoc3,015 bytesreferences/color-systems.mddoc4,146 bytesreferences/design-theory.mddoc2,666 bytesreferences/figure-intent-and-render-qa.mddoc5,033 bytesreferences/figure-set-consistency.mddoc3,895 bytesreferences/imaging-panels.mddoc3,079 bytesreferences/journal-family-visual-style.mddoc8,642 bytesreferences/nature-figure-spec.mddoc6,277 bytesreferences/radiology-figure-guidelines.mddoc2,948 bytesreferences/survival-figures.mddoc5,521 bytesscripts/audit_figure_export.pyruns5,368 bytestests/test_audit_figure_export.pyruns2,633 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-frontier
When your agent uses it
Identify evidence-grounded imaging frontiers and gaps; not design lock or journal choice.
What it loads into context
Frontmatter
27 tokensAlways available to the agent
SKILL.md
1,554 tokensWhen the skill is activated
Reference documents
4,337 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Files
README.mddoc2,300 bytesSKILL.mdcore7,060 bytesagents/openai.yamlasset260 bytesreferences/ai-radiogenomics-frontier-map.mddoc4,896 bytesreferences/evidence-layer.mddoc5,201 bytesreferences/frontier-themes.mddoc5,244 bytesreferences/idea-to-question.mddoc2,824 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-grant
When your agent uses it
Develop/review radiology grants against a live call, including current NSFC rules, code/call routing, funder criteria and imaging feasibility; not papers or decks. CN: 标书、国自然、基金评审
What it loads into context
Frontmatter
56 tokensAlways available to the agent
SKILL.md
2,779 tokensWhen the skill is activated
Reference documents
27,213 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Route by task
- Funder-package finalization boundary
- Review workflow
- Output contract
- Handoffs
Scripts executed separately
scripts/validate_grant_skill.ps1
Files
README.mddoc3,677 bytesSKILL.mdcore12,928 bytesSKILL.mdcore12,928 bytesSKILL.mdcore12,928 bytesSKILL.mdcore12,928 bytesSKILL.mdcore12,928 bytesSKILL.mdcore12,928 bytesSKILL.mdcore12,928 bytesagents/openai.yamlasset356 bytesreferences/call-and-compliance-gate.mddoc10,656 bytesreferences/evidence-contract-and-stopping-rules.mddoc4,919 bytesreferences/feasibility-and-pitfalls.mddoc4,876 bytesreferences/grant-architecture.mddoc6,309 bytesreferences/imaging-methodology-router.mddoc7,501 bytesreferences/international-grants.mddoc17,341 bytesreferences/nsfc-2024-2026-change-map.mddoc8,811 bytesreferences/nsfc-application-content-playbook.mddoc6,527 bytesreferences/nsfc-radiology-code-and-call-router.mddoc6,031 bytesreferences/radiology-feasibility-audit.mddoc11,056 bytesreferences/reframe-and-innovation.mddoc3,635 bytesreferences/review-modes-and-criteria.mddoc5,782 bytesreferences/source-registry.mddoc13,278 bytesscripts/validate_grant_skill.ps1runs10,575 bytestemplates/aim-milestone-risk-register.mddoc2,314 bytestemplates/grant-call-passport.mddoc4,721 bytestemplates/grant-review-report.mddoc4,085 bytestests/routing-cases.jsonasset15,833 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-health-economics
When your agent uses it
Plan/audit imaging economic evaluation, decision models, budget impact, uncertainty and HTA reporting.
What it loads into context
Frontmatter
31 tokensAlways available to the agent
SKILL.md
2,151 tokensWhen the skill is activated
Reference documents
4,505 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Route by mode
- Input passport
- Required workflow
- STOP gates
- Radiology-specific cost and consequence map
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_health_economics_skill.ps1
Files
SKILL.mdcore10,527 bytesagents/openai.yamlasset313 bytesreferences/evaluation-design-and-imaging-pathway.mddoc5,916 bytesreferences/modeling-uncertainty-and-hta.mddoc5,265 bytesreferences/source-registry.mddoc3,635 bytesscripts/validate_health_economics_skill.ps1runs7,771 bytestemplates/health-economic-evaluation-passport.mddoc3,405 bytestemplates/model-and-uncertainty-register.mddoc2,495 bytestests/routing-cases.jsonasset9,811 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-innovation-transfer
When your agent uses it
Assess disclosure, prior-art handoff, rights and transfer readiness; not patentability, FTO or legal advice.
What it loads into context
Frontmatter
34 tokensAlways available to the agent
SKILL.md
1,985 tokensWhen the skill is activated
Reference documents
2,945 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Input passport
- Route by mode
- STOP gates
- Radiology-specific diligence
- Workflow and output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_innovation_transfer_skill.ps1
Files
SKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesSKILL.mdcore9,742 bytesagents/openai.yamlasset290 bytesreferences/patent-readiness-and-diligence.mddoc2,825 bytesreferences/source-registry.mddoc4,075 bytesreferences/transfer-modes-and-evidence-gates.mddoc3,235 bytesscripts/validate_innovation_transfer_skill.ps1runs7,353 bytestemplates/diligence-evidence-map.mddoc1,326 bytestemplates/innovation-disclosure-passport.mddoc1,580 bytestemplates/nonconfidential-summary.mddoc666 bytestests/routing-cases.jsonasset7,511 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-journal
When your agent uses it
Match a near-finished imaging paper to live journal scope and tier; not scientific review or file audit.
What it loads into context
Frontmatter
31 tokensAlways available to the agent
SKILL.md
1,318 tokensWhen the skill is activated
Reference documents
6,230 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Files
README.mddoc2,114 bytesSKILL.mdcore5,992 bytesSKILL.mdcore5,992 bytesagents/openai.yamlasset271 bytesreferences/fit-grading.mddoc3,202 bytesreferences/submission-logistics.mddoc3,547 bytesreferences/venue-patterns.mddoc4,339 bytesreferences/venue-style-profiles.mddoc17,832 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-method-evaluation
When your agent uses it
Audit parameter provenance, metric fit, fair comparisons and robustness; not execution or paper review.
What it loads into context
Frontmatter
29 tokensAlways available to the agent
SKILL.md
2,297 tokensWhen the skill is activated
Reference documents
5,298 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- Choose the entry mode
- Minimal intake
- Required workflow
- Scientific red lines
- Domain routing
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_method_evaluation_skill.ps1
Files
SKILL.mdcore11,193 bytesSKILL.mdcore11,193 bytesagents/openai.yamlasset313 bytesreferences/parameter-and-methodology-evaluation.mddoc16,488 bytesscripts/validate_method_evaluation_skill.ps1runs4,109 bytestemplates/local-parameter-and-method-experience-registry.mddoc2,280 bytestemplates/parameter-methodology-evaluation-matrix.mddoc6,046 bytestests/evaluation-cases.jsonasset6,004 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-paper2ppt
When your agent uses it
Plan/create/audit evidence-led research decks for defenses, meetings and talks, with render QA. CN: PPT、答辩、组会汇报
What it loads into context
Frontmatter
43 tokensAlways available to the agent
SKILL.md
2,233 tokensWhen the skill is activated
Reference documents
13,287 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- When to use
- Scope and boundaries
- Intake contract
- Route before writing slides
- Invariants
- Workflow
- Output contract
- Handoffs
Scripts executed separately
scripts/validate_scientific_presentation_skill.ps1
Files
README.mddoc1,594 bytesSKILL.mdcore10,279 bytesSKILL.mdcore10,279 bytesSKILL.mdcore10,279 bytesSKILL.mdcore10,279 bytesSKILL.mdcore10,279 bytesSKILL.mdcore10,279 bytesSKILL.mdcore10,279 bytesagents/openai.yamlasset305 bytesreferences/claim-evidence-and-narrative.mddoc11,273 bytesreferences/deck-quality-qa.mddoc13,925 bytesreferences/scientific-deck-routing.mddoc13,649 bytesreferences/visual-evidence-and-radiology-images.mddoc17,007 bytesscripts/validate_scientific_presentation_skill.ps1runs9,826 bytestemplates/deck-brief.mddoc3,251 bytestemplates/slide-map-and-source-ledger.mddoc2,942 bytestests/routing-cases.jsonasset11,113 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-pipeline
When your agent uses it
Mentor and route ambiguous, multistage or resumed radiology research; tutoring defaults to read-only. CN: 总控、课题导航、下一步
What it loads into context
Frontmatter
43 tokensAlways available to the agent
SKILL.md
4,298 tokensWhen the skill is activated
Reference documents
36,139 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- When to use
- Core stance
- Operating modes
- When to open extra files
- Workflow
- Stage-gate rule
- Output contract
- Boundaries
Scripts executed separately
scripts/action_authorization_trace_test.pyscripts/capability_maturity_catalog_test.pyscripts/compute_analysis_lock_digest.pyscripts/compute_project_state_digests.pyscripts/init_research_project.pyscripts/test_experiment_lineage.pyscripts/test_research_project.pyscripts/validate_action_authorization_trace.pyscripts/validate_adversarial_behavior_cases.ps1scripts/validate_capability_maturity_catalog.pyscripts/validate_experiment_lineage.pyscripts/validate_global_research_routes.ps1scripts/validate_research_project.pyscripts/validate_standalone_release.ps1
Files
SKILL.mdcore20,350 bytesSKILL.mdcore20,350 bytesSKILL.mdcore20,350 bytesSKILL.mdcore20,350 bytesSKILL.mdcore20,350 bytesagents/openai.yamlasset365 bytesassets/action_authorization_trace.template.jsonasset2,617 bytesassets/ai_use_ledger.template.csvasset271 bytesassets/artifact_manifest.template.csvasset159 bytesassets/claim_register.template.csvasset327 bytesassets/decision_log.template.csvasset80 bytesassets/display_register.template.csvasset131 bytesassets/experiment-lineage.template.jsonasset1,684 bytesassets/project_state.template.jsonasset1,613 bytesassets/reported_values.template.csvasset143 bytesassets/research-decision-packet.template.mddoc8,641 bytesassets/stakeholder_decision_ledger.template.csvasset245 bytesassets/team_charter.template.mddoc1,038 bytesreferences/action-authorization-and-execution-trace.mddoc9,706 bytesreferences/adversarial-research-behavior-contract.mddoc3,060 bytesreferences/capability-maturity-and-release-governance.mddoc7,528 bytesreferences/capability-maturity-registry.jsonasset36,938 bytesreferences/cross-artifact-consistency.mddoc3,283 bytesreferences/equity-stakeholder-and-participation-gate.mddoc4,213 bytesreferences/evidence-based-skill-improvement-loop.mddoc3,767 bytesreferences/experiment-lineage-dag.mddoc4,021 bytesreferences/open-science-and-reproducibility-gate.mddoc6,611 bytesreferences/post-publication-and-staleness-lifecycle.mddoc5,270 bytesreferences/progressive-disclosure-and-resource-reachability.mddoc2,218 bytesreferences/project-passport-and-registries.mddoc13,819 bytesreferences/research-decision-cycle.mddoc8,954 bytesreferences/research-intent-routing.mddoc31,323 bytesreferences/research-lifecycle-capability-map.mddoc12,875 bytesreferences/responsible-research-governance-routing.mddoc3,862 bytesreferences/scientific-scope-and-handoff-routing.mddoc9,398 bytesreferences/simulation-and-teaching-data.mddoc2,528 bytesreferences/source-freshness-governance.mddoc2,498 bytesreferences/stage-gates-and-handoffs.mddoc13,844 bytesreferences/tutor-state-machine.mddoc3,590 bytesreferences/underpowered-fallback.mddoc3,837 bytesscripts/action_authorization_trace_test.pyruns8,788 bytesscripts/capability_maturity_catalog_test.pyruns5,244 bytesscripts/compute_analysis_lock_digest.pyruns2,840 bytesscripts/compute_project_state_digests.pyruns9,353 bytesscripts/init_research_project.pyruns6,212 bytesscripts/test_experiment_lineage.pyruns11,507 bytesscripts/test_research_project.pyruns34,634 bytesscripts/validate_action_authorization_trace.pyruns27,312 bytesscripts/validate_adversarial_behavior_cases.ps1runs2,172 bytesscripts/validate_capability_maturity_catalog.pyruns26,374 bytesscripts/validate_experiment_lineage.pyruns25,302 bytesscripts/validate_global_research_routes.ps1runs15,063 bytesscripts/validate_research_project.pyruns48,325 bytesscripts/validate_standalone_release.ps1runs3,509 bytestests/adversarial-behavior-cases.jsonasset6,618 bytestests/global-research-routing-cases.jsonasset32,581 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-polishing
When your agent uses it
Polish existing research prose while preserving facts and claims; not drafting or scientific repair.
What it loads into context
Frontmatter
27 tokensAlways available to the agent
SKILL.md
1,186 tokensWhen the skill is activated
Reference documents
4,601 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output format
- Quality bar
- Handoffs
Files
README.mddoc1,572 bytesSKILL.mdcore5,222 bytesagents/openai.yamlasset267 bytesreferences/radiology-house-style.mddoc3,312 bytesreferences/stat-reporting.mddoc3,271 bytesreferences/style-guardrails.mddoc1,825 bytesreferences/venue-voice-and-house-style.mddoc8,056 bytes../radiology-writing/references/section-contract-and-style-profile.mddoc2,499 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-prereview
When your agent uses it
Run author, peer or editorial scientific review with traceable findings; not checklists or upload audits. CN: 模拟审稿、预审、大修风险
What it loads into context
Frontmatter
44 tokensAlways available to the agent
SKILL.md
3,270 tokensWhen the skill is activated
Reference documents
7,446 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Scripts executed separately
scripts/test_prereview_governance_gates.pyscripts/test_scientific_prereview_receipt.pyscripts/validate_prereview_governance_gates.pyscripts/validate_scientific_prereview_receipt.py
Files
README.mddoc2,443 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesSKILL.mdcore14,837 bytesagents/openai.yamlasset259 bytesreferences/ai-radiogenomics-pitfall-audit.mddoc2,544 bytesreferences/dealbreakers.mddoc2,571 bytesreferences/multi-reviewer-panel.mddoc3,718 bytesreferences/pre-submission-hard-gates.mddoc6,952 bytesreferences/review-dimensions.mddoc3,921 bytesreferences/review-modes-and-editorial-governance.mddoc5,250 bytesreferences/review-report-format.mddoc2,153 bytesreferences/scientific-prereview-receipt-contract.mddoc4,778 bytesscripts/test_prereview_governance_gates.pyruns4,819 bytesscripts/test_scientific_prereview_receipt.pyruns11,003 bytesscripts/validate_prereview_governance_gates.pyruns10,052 bytesscripts/validate_scientific_prereview_receipt.pyruns15,713 bytestemplates/evidence-synthesis-source-artifacts.template.jsonasset929 bytestemplates/prereview-governance-gates.template.jsonasset998 bytestemplates/scientific-prereview-receipt.template.jsonasset1,293 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-qualitative-mixed-methods
When your agent uses it
Design/audit qualitative and mixed-methods sampling, reflexivity, integration and claim limits.
What it loads into context
Frontmatter
33 tokensAlways available to the agent
SKILL.md
2,104 tokensWhen the skill is activated
Reference documents
4,491 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Route by mode
- Input passport
- Required workflow
- STOP gates
- Radiology-specific evidence limits
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_qualitative_mixed_methods_skill.ps1
Files
SKILL.mdcore10,440 bytesSKILL.mdcore10,440 bytesagents/openai.yamlasset321 bytesreferences/methods-and-rigor.mddoc7,008 bytesreferences/mixed-methods-integration.mddoc5,763 bytesreferences/source-registry.mddoc3,529 bytesscripts/validate_qualitative_mixed_methods_skill.ps1runs7,348 bytestemplates/joint-display-and-discordance-ledger.mddoc1,886 bytestemplates/qualitative-mixed-methods-passport.mddoc3,593 bytestests/routing-cases.jsonasset9,318 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-radiogenomics
When your agent uses it
Interpret mechanisms and imaging-mechanism bridges with competing explanations and causal ceilings.
What it loads into context
Frontmatter
27 tokensAlways available to the agent
SKILL.md
2,030 tokensWhen the skill is activated
Reference documents
148,324 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Ownership gate before loading the manifest
- Owned scopes
- Routing protocol
- Tutor interaction
- Scientific invariants
- Progressive-loading constraints
- Handoff contract
- Boundary
Scripts executed separately
scripts/audit_transcriptomics_literature_maps.ps1scripts/audit_transparent_peer_review_corpus.ps1scripts/test_scientific_handoff.pyscripts/validate_scientific_handoff.pyscripts/validate_skill_routes.ps1
Files
README.mddoc15,659 bytesSKILL.mdcore10,184 bytesSKILL.mdcore10,184 bytesagents/openai.yamlasset362 bytesmanifest.yamlasset21,865 bytesreferences/analysis-plan-sap.mddoc10,653 bytesreferences/architecture-provenance.mddoc8,603 bytesreferences/association-validation.mddoc7,335 bytesreferences/biological-validation.mddoc7,662 bytesreferences/bulk-rna-literature-map-2024-2026.tsvasset33,628 bytesreferences/bulk-rna-research-guidance.mddoc55,890 bytesreferences/cohort-design.mddoc8,592 bytesreferences/constructive-manuscript-review-chain.mddoc21,831 bytesreferences/deep-radiogenomics-fusion-strategies.mddoc5,423 bytesreferences/imaging-only-mentoring.mddoc4,856 bytesreferences/imaging-reviewer-playbook.mddoc3,768 bytesreferences/imaging-submission-package.mddoc2,659 bytesreferences/mechanism-reviewer-playbook.mddoc4,300 bytesreferences/mechanism-submission-package.mddoc3,561 bytesreferences/multi-omics-integration.mddoc4,473 bytesreferences/omics-qc-preprocessing.mddoc4,659 bytesreferences/pathology-mechanism-research-guidance.mddoc18,841 bytesreferences/perturbation-causal-review.mddoc11,486 bytesreferences/pitfalls.mddoc8,085 bytesreferences/public-data-overlap-check.mddoc3,854 bytesreferences/radiogenomics-submission-package.mddoc3,820 bytesreferences/radiomics-mechanism-bridge.mddoc46,032 bytesreferences/radiomics-pipeline.mddoc4,067 bytesreferences/radiopathology-mechanism-validation.mddoc44,467 bytesreferences/research-mentoring-and-idea-development.mddoc37,930 bytesreferences/review-response-state-crosswalk.mddoc1,904 bytesreferences/reviewer-playbook.mddoc4,389 bytesreferences/sample-to-image-mapping.mddoc3,170 bytesreferences/scientific-handoff-contract.mddoc6,690 bytesreferences/scientific-writing-chain.mddoc24,627 bytesreferences/single-cell-literature-map-2024-2026.tsvasset33,813 bytesreferences/single-cell-research-guidance.mddoc43,868 bytesreferences/single-cell-spatial.mddoc5,382 bytesreferences/spatial-transcriptomics-literature-map-2024-2026.tsvasset35,454 bytesreferences/spatial-transcriptomics-research-guidance.mddoc77,150 bytesreferences/standalone-mechanism-mentoring.mddoc16,593 bytesreferences/transcriptomics-interpretation-framework.mddoc36,495 bytesreferences/transcriptomics-literature-evidence-map-2024-2026.mddoc9,079 bytesreferences/transparent-peer-review-concern-ontology-v1.tsvasset8,127 bytesreferences/transparent-peer-review-corpus-2024-2026.tsvasset339,241 bytesreferences/transparent-peer-review-lessons-2024-2026.mddoc19,924 bytesscripts/audit_transcriptomics_literature_maps.ps1runs7,073 bytesscripts/audit_transparent_peer_review_corpus.ps1runs22,897 bytesscripts/test_scientific_handoff.pyruns8,772 bytesscripts/validate_scientific_handoff.pyruns19,341 bytesscripts/validate_skill_routes.ps1runs66,814 bytesstatic/core/failure-modes-and-integrity-gates.mddoc5,054 bytesstatic/core/output-presets-and-revision-loop.mddoc7,083 bytesstatic/core/reader-and-mentor-workflow.mddoc5,661 bytesstatic/core/research-request-passport.mddoc4,768 bytesstatic/core/stance-and-boundaries.mddoc4,414 bytesstatic/core/terminology-and-claim-ledgers.mddoc5,167 bytestemplates/claim-evidence-mechanism-ledger.mddoc13,062 bytestemplates/claim-to-section-writing-map.mddoc12,463 bytestemplates/constructive-review-and-repair-matrix.mddoc12,353 bytestemplates/mechanism-bridge-canvas.mddoc11,153 bytestemplates/mentor-decision-memo.mddoc9,899 bytestemplates/research-request-passport.mddoc11,456 bytestemplates/reviewer-audit.mddoc14,710 bytestemplates/revision-trace-matrix.mddoc9,673 bytestemplates/scientific-writing-handoff-packet.template.jsonasset1,760 bytestests/routing-cases.jsonasset43,406 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-radiomics
When your agent uses it
Design/audit radiomics preprocessing, IBSI extraction, stability, leakage-safe selection and validation.
What it loads into context
Frontmatter
30 tokensAlways available to the agent
SKILL.md
1,691 tokensWhen the skill is activated
Reference documents
5,042 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Handoffs
Scripts executed separately
tests/test_radiomics_boundary_contracts.py
Files
README.mddoc2,150 bytesSKILL.mdcore7,705 bytesagents/openai.yamlasset254 bytesreferences/feature-extraction.mddoc5,756 bytesreferences/leakage-audit.mddoc2,298 bytesreferences/preprocessing-ibsi.mddoc4,178 bytesreferences/reproducibility-artifacts.mddoc2,268 bytesreferences/selection-modelling.mddoc6,182 bytestests/test_radiomics_boundary_contracts.pyruns2,586 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-reader
When your agent uses it
Create bilingual figure-aware readers from supplied papers; not reader-study or MRMC design.
What it loads into context
Frontmatter
26 tokensAlways available to the agent
SKILL.md
1,417 tokensWhen the skill is activated
Reference documents
828 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable defaults
- What to preserve (and why it matters for imaging papers)
- When to open extra files
- Workflow
- Block shapes
- Output contract
- Tooling & handoffs
Files
README.mddoc1,328 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesSKILL.mdcore6,458 bytesagents/openai.yamlasset274 bytesreferences/structured-reading-notes.mddoc2,247 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-reporting
When your agent uses it
Select/audit reporting guidelines across imaging AI, diagnosis, reviews, guidelines and economics.
What it loads into context
Frontmatter
27 tokensAlways available to the agent
SKILL.md
3,563 tokensWhen the skill is activated
Reference documents
16,776 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- Routing — pick the guideline(s) before auditing
- When to open extra files
- Workflow
- Integrity hot-spots (audit these even if not asked)
- Output contract
- Quality bar
- Handoffs
Scripts executed separately
scripts/validate_prisma_routes.ps1scripts/validate_quadas_currency.ps1tests/test_guideline_version_contracts.py
Files
README.mddoc3,764 bytesSKILL.mdcore14,591 bytesagents/openai.yamlasset260 bytesreferences/claim-2024.mddoc4,135 bytesreferences/clear-metrics-rqs.mddoc4,745 bytesreferences/guideline-consensus-qualitative-economic-implementation.mddoc3,966 bytesreferences/guideline-router.mddoc9,773 bytesreferences/guideline-versions.mddoc12,719 bytesreferences/ibsi-features.mddoc3,415 bytesreferences/nature-reporting-summary.mddoc5,458 bytesreferences/prisma-general-scoping.mddoc7,869 bytesreferences/radiology-submission-map.mddoc2,835 bytesreferences/stard-prisma-quadas.mddoc5,460 bytesreferences/tripod-ai-probast.mddoc4,268 bytesscripts/validate_prisma_routes.ps1runs1,918 bytesscripts/validate_quadas_currency.ps1runs5,403 bytestests/prisma-routing-cases.jsonasset2,653 bytestests/test_guideline_version_contracts.pyruns2,944 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-reproducibility
When your agent uses it
Audit/package computational replay with manifests, environments, provenance and evidence levels.
What it loads into context
Frontmatter
26 tokensAlways available to the agent
SKILL.md
2,355 tokensWhen the skill is activated
Reference documents
4,832 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable boundaries
- Route by mode
- Input passport
- Two-axis evidence verdict
- Required workflow
- STOP gates
- Radiology-specific provenance
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_reproducibility_skill.ps1
Files
SKILL.mdcore11,408 bytesSKILL.mdcore11,408 bytesagents/openai.yamlasset302 bytesreferences/replay-contract-and-levels.mddoc6,653 bytesreferences/restricted-data-archiving-and-software.mddoc4,749 bytesreferences/source-registry.mddoc3,850 bytesscripts/validate_reproducibility_skill.ps1runs8,260 bytestemplates/minimum-replay-package-manifest.mddoc3,064 bytestemplates/reproducibility-passport.mddoc3,969 bytestests/routing-cases.jsonasset10,637 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-research-integrity
When your agent uses it
Audit authorship, COI, AI use, selective reporting and artifact integrity; not misconduct adjudication.
What it loads into context
Frontmatter
33 tokensAlways available to the agent
SKILL.md
1,724 tokensWhen the skill is activated
Reference documents
3,803 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Non-negotiable classification boundary
- Choose the mode
- Input passport
- Required workflow
- Stop and escalation gates
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_research_integrity_skill.ps1
Files
SKILL.mdcore8,483 bytesSKILL.mdcore8,483 bytesSKILL.mdcore8,483 bytesSKILL.mdcore8,483 bytesagents/openai.yamlasset305 bytesreferences/authorship-disclosure-and-selective-reporting.mddoc4,114 bytesreferences/evidence-states-and-escalation.mddoc4,478 bytesreferences/provenance-and-publication-record.mddoc4,525 bytesreferences/source-registry.mddoc2,659 bytesscripts/validate_research_integrity_skill.ps1runs6,620 bytestemplates/authorship-coi-ai-ledger.mddoc1,162 bytestemplates/integrity-audit-report.mddoc1,491 bytestests/routing-cases.jsonasset6,198 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-research-ops
When your agent uses it
Plan/audit sites, RACI, milestones, dependencies, resources, risks and closeout; not scientific design.
What it loads into context
Frontmatter
35 tokensAlways available to the agent
SKILL.md
2,321 tokensWhen the skill is activated
Reference documents
3,661 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Operating modes
- Input passport
- Operational evidence states
- Post-award funder-reporting boundary
- Required workflow
- Stop and escalation gates
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_research_ops_skill.ps1
Files
SKILL.mdcore11,413 bytesSKILL.mdcore11,413 bytesSKILL.mdcore11,413 bytesagents/openai.yamlasset287 bytesreferences/operations-control-model.mddoc3,374 bytesreferences/risk-change-freeze-and-closeout.mddoc4,392 bytesreferences/site-readiness-and-imaging-operations.mddoc3,955 bytesreferences/source-registry.mddoc2,879 bytesscripts/validate_research_ops_skill.ps1runs6,942 bytestemplates/research-operations-control-book.mddoc1,489 bytestemplates/site-readiness-freeze-register.mddoc1,202 bytestests/routing-cases.jsonasset7,913 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-response
When your agent uses it
Adjudicate reviews, draft point-by-point responses and verify closure; not initial prereview.
What it loads into context
Frontmatter
28 tokensAlways available to the agent
SKILL.md
3,875 tokensWhen the skill is activated
Reference documents
22,027 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- Reject decisions: appeal or move on
- Output contract
- Handoffs
Scripts executed separately
scripts/audit_response_evidence_map.ps1scripts/test_response_package_receipt.pyscripts/validate_response_package_receipt.pyscripts/validate_response_skill.ps1
Files
README.mddoc4,792 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesSKILL.mdcore18,388 bytesagents/openai.yamlasset371 bytesreferences/action-mapping.mddoc5,918 bytesreferences/imaging-mechanism-reviewer-playbook.mddoc2,878 bytesreferences/imaging-reviewer-playbook.mddoc2,948 bytesreferences/mechanism-reviewer-playbook.mddoc2,994 bytesreferences/prereview-response-state-crosswalk.mddoc3,487 bytesreferences/radiogenomics-state-crosswalk.mddoc1,419 bytesreferences/reject-decision-tree.mddoc7,784 bytesreferences/response-audit-gate.mddoc11,525 bytesreferences/revision-letter-writing-chain.mddoc10,842 bytesreferences/transparent-peer-review-response-map-2024-2026.tsvasset189,569 bytesreferences/transparent-peer-review-response-patterns-2024-2026.mddoc13,782 bytesscripts/audit_response_evidence_map.ps1runs10,152 bytesscripts/test_response_package_receipt.pyruns24,029 bytesscripts/validate_response_package_receipt.pyruns22,332 bytesscripts/validate_response_skill.ps1runs17,497 bytestemplates/final-response-and-verification-package.mddoc12,193 bytestemplates/local-reviewer-experience-registry.mddoc2,701 bytestemplates/point-by-point-response-matrix.mddoc7,087 bytestemplates/response-package-receipt.template.jsonasset1,318 bytestests/response-contract-cases.jsonasset15,050 bytes../radiology-systematic-review/references/review-methods-and-quality-gates.mddoc12,119 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-search
When your agent uses it
Search/deduplicate imaging papers or datasets into reproducible corpora; not claim checks or review synthesis. CN: 文献检索、公共数据集
What it loads into context
Frontmatter
41 tokensAlways available to the agent
SKILL.md
1,511 tokensWhen the skill is activated
Reference documents
4,471 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Workflow
- MCP/tooling note
- Output contract
- Handoffs
Scripts executed separately
scripts/validate_retrieval_run_receipt.pytests/test_retrieval_run_receipt.py
Files
README.mddoc1,775 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesSKILL.mdcore6,588 bytesagents/openai.yamlasset311 bytesreferences/dataset-sources.mddoc2,060 bytesreferences/literature-survey-workflow.mddoc6,701 bytesreferences/living-literature-and-acquisition.mddoc2,736 bytesreferences/retrieval-run-receipt.mddoc3,688 bytesreferences/source-tiers.mddoc2,908 bytesscripts/validate_retrieval_run_receipt.pyruns12,855 bytestemplates/retrieval-run-receipt.template.jsonasset951 bytestests/test_retrieval_run_receipt.pyruns5,844 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-stats
When your agent uses it
Plan/compute/audit inference on defined data/effect rows: CI, AUC, MRMC, survival, meta-analysis and power. CN: 统计、样本量、AUC比较、校准
What it loads into context
Frontmatter
54 tokensAlways available to the agent
SKILL.md
4,093 tokensWhen the skill is activated
Reference documents
23,429 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- Choose the route
- When to use
- When to open extra files
- Workflow
- Reporting templates (fill from real output — never fabricate)
- Output contract
- Integrity & handoffs
Scripts executed separately
scripts/validate_stats_skill.ps1tests/test_methodology_p1_contracts.py
Files
README.mddoc3,637 bytesSKILL.mdcore18,142 bytesagents/openai.yamlasset344 bytesreferences/agreement-mrmc.mddoc5,530 bytesreferences/analysis-hierarchy-and-missingness.mddoc3,301 bytesreferences/causal-and-clinical-impact-inference.mddoc8,316 bytesreferences/diagnostic-accuracy.mddoc7,065 bytesreferences/experimental-inference-and-power.mddoc11,301 bytesreferences/high-dimensional-omics.mddoc5,384 bytesreferences/incremental-value.mddoc7,877 bytesreferences/longitudinal-and-multistate-imaging.mddoc7,944 bytesreferences/meta-analysis-inference.mddoc12,257 bytesreferences/method-comparison-and-sensitivity.mddoc3,323 bytesreferences/model-evaluation.mddoc7,355 bytesreferences/quantitative-imaging-measurement-science.mddoc7,890 bytesreferences/sample-size.mddoc5,821 bytesreferences/survival-prognostic.mddoc2,729 bytesscripts/validate_stats_skill.ps1runs5,633 bytestemplates/experimental-inference-power-brief.mddoc5,611 bytestemplates/meta-analysis-statistical-brief.mddoc4,681 bytestests/routing-cases.jsonasset12,400 bytestests/test_methodology_p1_contracts.pyruns6,523 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-submission
When your agent uses it
Audit journal or conference packages against current exact-venue fields/files; not scientific review. CN: 投稿材料、投稿包、文件检查
What it loads into context
Frontmatter
38 tokensAlways available to the agent
SKILL.md
4,484 tokensWhen the skill is activated
Reference documents
32,048 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- When to use
- Non-negotiable boundaries
- Select the submission route first
- Intake passport
- Progressive routing
- Workflow
- File-type inspection routing
- Readiness states
- Output contract
- Handoffs
Scripts executed separately
scripts/audit_submission_package.pyscripts/render_submission_audit_report.pyscripts/resolve_submission_intake.pyscripts/submission_security.pyscripts/test_audit_submission_package.pyscripts/test_submission_golden_scenarios.pyscripts/validate_conference_portal_package.pyscripts/validate_submission_skill.ps1scripts/validate_submission_skill.py
Files
SKILL.mdcore21,150 bytesSKILL.mdcore21,150 bytesSKILL.mdcore21,150 bytesSKILL.mdcore21,150 bytesSKILL.mdcore21,150 bytesSKILL.mdcore21,150 bytesSKILL.mdcore21,150 bytesagents/openai.yamlasset389 bytesassets/conference-portal-intake.template.jsonasset2,056 bytesassets/conference-portal-manifest.template.csvasset411 bytesassets/contributor-disclosure-handoff.template.csvasset657 bytesassets/cover-letter-brief.template.mddoc507 bytesassets/submission-audit-report.template.mddoc7,775 bytesassets/submission-intake.evidence-synthesis.template.jsonasset1,053 bytesassets/submission-intake.template.jsonasset1,027 bytesassets/submission-manifest.template.csvasset595 bytesassets/submission-transfer-context.template.jsonasset557 bytesreferences/all-file-audit-workflow.mddoc14,394 bytesreferences/authorship-ai-and-public-access-handoff.mddoc4,898 bytesreferences/conference-portal-finalization.mddoc7,897 bytesreferences/final-technical-audit.mddoc3,174 bytesreferences/intake-transfer-and-human-review.mddoc10,993 bytesreferences/journal-required-materials.jsonasset23,493 bytesreferences/journal-requirements-evidence.tsvasset50,289 bytesreferences/journal-router.mddoc6,378 bytesreferences/journals/advanced-science.mddoc6,023 bytesreferences/journals/cancer-cell.mddoc6,047 bytesreferences/journals/cell-reports-medicine.mddoc5,834 bytesreferences/journals/eclinicalmedicine.mddoc3,753 bytesreferences/journals/jama-network-open.mddoc5,690 bytesreferences/journals/lancet-digital-health.mddoc4,613 bytesreferences/journals/nature-communications.mddoc5,391 bytesreferences/journals/nature-medicine.mddoc4,981 bytesreferences/journals/npj-digital-medicine.mddoc5,401 bytesreferences/journals/npj-precision-oncology.mddoc5,149 bytesreferences/journals/radiology.mddoc6,854 bytesreferences/maintainer-validation.mddoc1,101 bytesreferences/source-authority-and-refresh.mddoc6,475 bytesreferences/submission-package-map.mddoc7,786 bytesreferences/validation-receipt-2026-08-22.mddoc12,131 bytesreferences/versioning-and-anonymization.mddoc2,838 bytesscripts/audit_submission_package.pyruns139,425 bytesscripts/render_submission_audit_report.pyruns21,638 bytesscripts/resolve_submission_intake.pyruns30,751 bytesscripts/submission_security.pyruns8,399 bytesscripts/test_audit_submission_package.pyruns101,765 bytesscripts/test_submission_golden_scenarios.pyruns45,403 bytesscripts/validate_conference_portal_package.pyruns20,947 bytesscripts/validate_submission_skill.ps1runs864 bytesscripts/validate_submission_skill.pyruns54,099 bytestests/submission-routing-cases.jsonasset5,791 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-systematic-review
When your agent uses it
Design/audit systematic or scoping reviews from protocol through synthesis, certainty and living updates.
What it loads into context
Frontmatter
29 tokensAlways available to the agent
SKILL.md
3,497 tokensWhen the skill is activated
Reference documents
9,551 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- Choose the entry mode
- Required route selection
- Minimal intake
- Required workflow
- Scientific red lines
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_systematic_review_skill.ps1
Files
SKILL.mdcore17,417 bytesagents/openai.yamlasset369 bytesreferences/evidence-synthesis-routing.mddoc12,360 bytesreferences/review-methods-and-quality-gates.mddoc12,119 bytesscripts/validate_systematic_review_skill.ps1runs5,006 bytestemplates/data-extraction-and-synthesis-matrix.mddoc6,999 bytestemplates/risk-of-bias-applicability-matrix.mddoc4,131 bytestemplates/systematic-review-protocol.mddoc9,500 bytestests/routing-cases.jsonasset9,551 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-table
When your agent uses it
Create/audit editable publication tables with source reconciliation; not figures or statistical inference.
What it loads into context
Frontmatter
25 tokensAlways available to the agent
SKILL.md
1,190 tokensWhen the skill is activated
Reference documents
1,769 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to open extra files
- Workflow
- Output contract
- Handoffs
Scripts executed separately
scripts/audit_table_csv.pytests/test_audit_table_csv.py
Files
SKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesSKILL.mdcore5,317 bytesagents/openai.yamlasset270 bytesassets/table-spec.template.csvasset217 bytesreferences/survival-and-model-tables.mddoc2,782 bytesreferences/table-archetypes.mddoc2,717 bytesreferences/table-style-and-qa.mddoc2,949 bytesscripts/audit_table_csv.pyruns3,947 bytestests/test_audit_table_csv.pyruns2,492 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-transcriptomics-analysis
When your agent uses it
Build/run/audit bulk RNA, sc/snRNA and spatial workflows with traceable QC; not mechanism claims.
What it loads into context
Frontmatter
34 tokensAlways available to the agent
SKILL.md
2,545 tokensWhen the skill is activated
Reference documents
5,499 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core contract
- Choose the entry mode
- Minimal intake
- Required workflow
- Modality routes
- Scientific red lines
- Output contract
- Handoffs and non-ownership
Scripts executed separately
scripts/validate_transcriptomics_analysis_skill.ps1
Files
SKILL.mdcore12,604 bytesSKILL.mdcore12,604 bytesSKILL.mdcore12,604 bytesSKILL.mdcore12,604 bytesagents/openai.yamlasset395 bytesreferences/modality-execution-workflows.mddoc12,435 bytesreferences/runtime-and-reproducibility-contract.mddoc5,456 bytesscripts/validate_transcriptomics_analysis_skill.ps1runs3,880 bytestemplates/analysis-run-manifest.mddoc1,780 bytestemplates/local-analysis-experience-registry.mddoc1,354 bytestemplates/local-transcriptomics-runtime-profile.mddoc1,459 bytestemplates/qc-decision-log.mddoc688 bytestemplates/transcriptomics-analysis-plan.mddoc2,742 bytestests/routing-cases.jsonasset4,488 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-translation
When your agent uses it
Design clinical use, reader/impact studies, human factors, deployment and lifecycle evidence.
What it loads into context
Frontmatter
27 tokensAlways available to the agent
SKILL.md
2,719 tokensWhen the skill is activated
Reference documents
15,026 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- Operating modes
- When to open extra files
- Workflow
- Output contract
- Quality bar
- Maintainer validation
- Handoffs
Scripts executed separately
scripts/validate_translation_skill.ps1
Files
README.mddoc3,061 bytesSKILL.mdcore12,939 bytesSKILL.mdcore12,939 bytesagents/openai.yamlasset280 bytesreferences/clinical-impact-study-design.mddoc9,366 bytesreferences/deployment-interoperability-and-site-acceptance.mddoc3,712 bytesreferences/evidence-state-and-translation-lifecycle.mddoc6,762 bytesreferences/human-factors-and-implementation.mddoc8,465 bytesreferences/implementation-science-and-scale-up.mddoc5,167 bytesreferences/production-monitoring-and-change-control.mddoc4,719 bytesreferences/prospective-deployment.mddoc4,904 bytesreferences/reader-study.mddoc4,526 bytesreferences/regulatory-and-deployment-readiness.mddoc6,297 bytesreferences/source-registry.mddoc5,185 bytesreferences/threshold-to-action.mddoc2,399 bytesreferences/use-scenario.mddoc1,690 bytesscripts/validate_translation_skill.ps1runs5,722 bytestemplates/clinical-translation-state-card.mddoc1,040 bytestemplates/production-monitoring-contract.mddoc1,553 bytestests/routing-cases.jsonasset9,313 bytes../radiology-writing/references/chinese-author-workflow.mddoc2,794 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubradiology-writing
When your agent uses it
Draft/restructure manuscripts or theses from fixed evidence; not polishing, review or rebuttal. CN: 论文写作、英文稿、结构化摘要
What it loads into context
Frontmatter
41 tokensAlways available to the agent
SKILL.md
4,231 tokensWhen the skill is activated
Reference documents
21,142 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Core stance
- When to use
- When to open extra files
- Intake (identify before drafting)
- Writing workflow
- RSNA / _Radiology_ route defaults
- Output format
- Handoffs
Files
../radiology-method-evaluation/references/parameter-and-methodology-evaluation.mddoc16,488 bytes../radiology-radiogenomics/references/scientific-handoff-contract.mddoc6,690 bytes../radiology-systematic-review/references/review-methods-and-quality-gates.mddoc12,119 bytesREADME.mddoc3,145 bytesSKILL.mdcore19,501 bytesSKILL.mdcore19,501 bytesagents/openai.yamlasset269 bytesreferences/argument-spine-and-stage-gates.mddoc12,589 bytesreferences/article-architecture.mddoc2,682 bytesreferences/cell-jama-wiley-shape.mddoc4,908 bytesreferences/chinese-author-workflow.mddoc2,794 bytesreferences/discussion.mddoc1,604 bytesreferences/examples/abstract-example.mddoc2,445 bytesreferences/journal-family-writing-style.mddoc11,362 bytesreferences/methods.mddoc3,834 bytesreferences/nature-family-shape.mddoc9,074 bytesreferences/results.mddoc2,752 bytesreferences/section-contract-and-style-profile.mddoc2,499 bytesreferences/structured-abstract.mddoc3,016 bytesreferences/thesis-and-dissertation-architecture.mddoc4,359 bytes
No excerpt is shown for this license. Read the source on GitHub.
View the complete source on GitHubSkills included
- radiology-acquisition-qc
- radiology-annotation
- radiology-bibliometrics
- radiology-citation
- radiology-clinical-domain
- radiology-consensus-guideline
- radiology-data
- radiology-deep-learning
- radiology-design
- radiology-dissemination
- radiology-ethics
- radiology-experiment-design
- radiology-figure
- radiology-frontier
- radiology-grant
- radiology-health-economics
- radiology-innovation-transfer
- radiology-journal
- radiology-method-evaluation
- radiology-paper2ppt
- radiology-pipeline
- radiology-polishing
- radiology-prereview
- radiology-qualitative-mixed-methods
- radiology-radiogenomics
- radiology-radiomics
- radiology-reader
- radiology-reporting
- radiology-reproducibility
- radiology-research-integrity
- radiology-research-ops
- radiology-response
- radiology-search
- radiology-stats
- radiology-submission
- radiology-systematic-review
- radiology-table
- radiology-transcriptomics-analysis
- radiology-translation
- radiology-writing
Repository facts
- License
- No license detected
- Created
- Jun 18, 2026
- Last pushed
- Sep 21, 2026
- Forks
- 20
- Open issues
- 0
- Project activity
- Active
Rank over the last 12 weeks
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Before you install
Network or broad shellAutomated signals, not a guarantee
Checked Nov 3, 2026
Not fully analyzed: some files were too long, unreadable or missing. This never lowers the level.
Show 300 notes
radiology-skills/skills/radiology-acquisition-qc/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-acquisition-qc/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-bibliometrics/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-bibliometrics/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-bibliometrics/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-citation/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-clinical-domain/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-clinical-domain/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-clinical-domain/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-design/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-dissemination/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-dissemination/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-dissemination/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-dissemination/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-dissemination/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-ethics/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-experiment-design/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-figure/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-grant/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedradiology-skills/skills/radiology-grant/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzed
- No broad tool permissions
- 1 dangerous shell commandin 1 file: radiology-stats/tests/test_methodology_p1_contracts.py:22
- 1,682 network referencesin 133 files: radiology-submission/scripts/test_audit_submission_package.py:46 radiology-submission/references/journal-requirements-evidence.tsv:1 radiology-radiogenomics/references/transparent-peer-review-corpus-2024-2026.tsv:1 and 130 more
- No instruction overrides
- 1 reference to secretsin 1 file: radiology-search/SKILL.md:68
- No requests to vote in Hot
Show all 1,761 signals by file
radiology-skills/skills/radiology-acquisition-qc/references/ct-acquisition-reconstruction.md
- Network accessline 116
- DICOM Standard Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 117
Use the current Parts 3, 4, 6 and 16 as applicable to identify information objects, attributes, services and coded terms; verify the edition used. - RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). Select the exa - Network accessline 118
services and coded terms; verify the edition used. - RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). Select the exact current CT profile and verify status rather than treating the index as conformance evidence. - Network accessline 119
- RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). Select the exact current - Network accessline 120
CT profile and verify status rather than treating the index as conformance evidence. - RSNA QIBA. [CT Small Lung Nodule Volume Assessment and Monitoring in Low Dose CT Screening, Profile 2023](https://doi.org/10.1148/QIBA/20231219). - Network accessline 121
- RSNA QIBA. [CT Small Lung Nodule Volume Assessment and Monitoring in Low Dose CT Screening, Profile 2023](https://doi.org/10.1148/QIBA/20231219). - RSNA QIBA. [CT Tumor Volume Change Profile 2022](https://doi.org/10.1148/QIBA/20220721). - Network accessline 122
Profile 2023](https://doi.org/10.1148/QIBA/20231219). - Network accessline 123
- RSNA QIBA. [CT Tumor Volume Change Profile 2022](https://doi.org/10.1148/QIBA/20220721). - Network accessline 124
- American College of Radiology. [Practice Parameters and Technical Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards). Verify the current CT standard, jurisdictio - Network accessline 125
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/diffusion-tensor-tractography.md
- Network accessline 80
- Jones DK, et al. [White matter integrity, fiber count, and other fallacies: the do's and don'ts of diffusion MRI](https://doi.org/10.1016/j.neuroimage.2012.06.081). - Network accessline 81
diffusion MRI](https://doi.org/10.1016/j.neuroimage.2012.06.081). - Network accessline 82
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 84
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/functional-mri.md
- Network accessline 82
- Nichols TE, et al. [Best practices in data analysis and sharing in neuroimaging using MRI (COBIDAS)](https://doi.org/10.1038/nn.4500). - Network accessline 83
(COBIDAS)](https://doi.org/10.1038/nn.4500). - Network accessline 84
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 86
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/mr-acquisition-reconstruction.md
- Network accessline 149
- DICOM Standard Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 150
- RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). Confirm the active MR - Network accessline 151
profile, stage and conformance conditions. - RSNA QIBA. [Diffusion-Weighted MRI and ADC Profile 2022](https://doi.org/10.1148/QIBA/20221215). - Network accessline 152
- RSNA QIBA. [Diffusion-Weighted MRI and ADC Profile 2022](https://doi.org/10.1148/QIBA/20221215). - American College of Radiology. [Practice Parameters and Technical - Network accessline 153
2022](https://doi.org/10.1148/QIBA/20221215). - Network accessline 154
- American College of Radiology. [Practice Parameters and Technical Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards). Verify the current MR technical standard an - Network accessline 155
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/mr-spectroscopy.md
- Network accessline 86
- Wilson M, et al. [Methodological consensus on clinical proton MRS of the brain](https://doi.org/10.1002/mrm.27742). - Network accessline 87
brain](https://doi.org/10.1002/mrm.27742). - Network accessline 88
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 90
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/pet-spect-acquisition-quantification.md
- Network accessline 134
- DICOM Standard Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 135
- RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). - Network accessline 136
- RSNA QIBA. [FDG-PET/CT as an Imaging Biomarker Measuring Response to Cancer Therapy, Profile 2023](https://doi.org/10.1148/QIBA/20230615). - International Atomic Energy Agency. [Quality Assurance for SPECT Systems, IAEA Human Health - Network accessline 137
2023](https://doi.org/10.1148/QIBA/20230615). - Network accessline 138
- International Atomic Energy Agency. [Quality Assurance for SPECT Systems, IAEA Human Health Series No. 6](https://www-pub.iaea.org/MTCD/Publications/PDF/Pub1394_web.pdf). - European Association of Nuclear Medicine. [Physics, instrumenta - Network accessline 139
Series No. 6](https://www-pub.iaea.org/MTCD/Publications/PDF/Pub1394_web.pdf). - Network accessline 140
- European Association of Nuclear Medicine. [Physics, instrumentation and data-analysis guideline index](https://eanm.org/publications/guidelines/overview/physics-instrumentation-data-analysis/). - Society of Nuclear Medicine and Molecula - Network accessline 141
index](https://eanm.org/publications/guidelines/overview/physics-instrumentation-data-analysis/). - Network accessline 142
- Society of Nuclear Medicine and Molecular Imaging. [Cardiac SPECT/CT and PET/CT procedure standard](https://snmmi.org/Web/Web/Clinical-Practice/Procedure-Standards/Standards/Cardiac-SPECT-CT-and-PET-CT-1.0.aspx). - American College of R - Network accessline 143
standard](https://snmmi.org/Web/Web/Clinical-Practice/Procedure-Standards/Standards/Cardiac-SPECT-CT-and-PET-CT-1.0.aspx). - Network accessline 145
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md
- Network accessline 183
- DICOM Standard Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 184
- RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). Select the exact - Network accessline 185
modality/use-case profile and verify its stage, actors, procedures and conformance conditions. - RSNA QIBA. [CT Small Lung Nodule Volume Profile 2023](https://doi.org/10.1148/QIBA/20231219). - Network accessline 186
- RSNA QIBA. [CT Small Lung Nodule Volume Profile 2023](https://doi.org/10.1148/QIBA/20231219). - RSNA QIBA. [Diffusion-Weighted MRI and ADC Profile - Network accessline 187
2023](https://doi.org/10.1148/QIBA/20231219). - Network accessline 188
- RSNA QIBA. [Diffusion-Weighted MRI and ADC Profile 2022](https://doi.org/10.1148/QIBA/20221215). - RSNA QIBA. [FDG-PET/CT Response Profile - Network accessline 189
2022](https://doi.org/10.1148/QIBA/20221215). - Network accessline 190
- RSNA QIBA. [FDG-PET/CT Response Profile 2023](https://doi.org/10.1148/QIBA/20230615). - RSNA QIBA. [Ultrasound Shear Wave Speed Profile - Network accessline 191
2023](https://doi.org/10.1148/QIBA/20230615). - Network accessline 192
- RSNA QIBA. [Ultrasound Shear Wave Speed Profile 2024](https://doi.org/10.1148/QIBA/20240115). - American College of Radiology. [Practice Parameters and Technical - Network accessline 193
2024](https://doi.org/10.1148/QIBA/20240115). - Network accessline 195
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/references/projection-radiography-mammo-dbt.md
- Network accessline 127
- DICOM Standard Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 128
- American College of Radiology. [Practice Parameters and Technical Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards). Verify the current standards for radiograph - Network accessline 129
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards). - Network accessline 132
- American College of Radiology, American Association of Physicists in Medicine, and Society for Imaging Informatics in Medicine. [Practice Parameter for Determinants of Image Quality in Mammography](https://www.acr.org/-/media/ACR/File - Network accessline 133
Imaging Informatics in Medicine. [Practice Parameter for Determinants of Image Quality in Mammography](https://www.acr.org/-/media/ACR/Files/Practice-Parameters/dig-mamo.pdf). - American College of Radiology. [Technical Standard for Diagn - Network accessline 134
Mammography](https://www.acr.org/-/media/ACR/Files/Practice-Parameters/dig-mamo.pdf). - Network accessline 135
- American College of Radiology. [Technical Standard for Diagnostic Medical Physics Performance Monitoring of Radiographic Equipment](https://gravitas.acr.org/PPTS/GetDocumentView?docId=120). - Network accessline 136
Monitoring of Radiographic Equipment](https://gravitas.acr.org/PPTS/GetDocumentView?docId=120). - American College of Radiology. [Practice Parameter for the Performance of Screening and - Network accessline 137
Equipment](https://gravitas.acr.org/PPTS/GetDocumentView?docId=120). - Network accessline 138
- American College of Radiology. [Practice Parameter for the Performance of Screening and Diagnostic Mammography](https://www.acr.org/-/media/ACR/Files/Practice-Parameters/Screen-Diag-Mammo.pdf). - Network accessline 140
Mammography](https://www.acr.org/-/media/ACR/Files/Practice-Parameters/Screen-Diag-Mammo.pdf).
radiology-skills/skills/radiology-acquisition-qc/references/ultrasound-ceus-elastography.md
- Network accessline 133
- DICOM Standard Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 134
- RSNA QIBA. [Profiles index](https://qibawiki.rsna.org/index.php/Profiles). - Network accessline 135
- RSNA QIBA. [Ultrasound Measurement of Shear Wave Speed for Estimation of Liver Fibrosis, Profile 2024](https://doi.org/10.1148/QIBA/20240115). - American College of Radiology and American Association of Physicists in Medicine. - Network accessline 136
2024](https://doi.org/10.1148/QIBA/20240115). - Network accessline 137
- American College of Radiology and American Association of Physicists in Medicine. [Technical Standard for Medical Physics Performance Monitoring of Diagnostic Ultrasound Equipment](https://gravitas.acr.org/PPTS/GetDocumentView?docId=1 - Network accessline 138
[Technical Standard for Medical Physics Performance Monitoring of Diagnostic Ultrasound Equipment](https://gravitas.acr.org/PPTS/GetDocumentView?docId=118). - American College of Radiology. [Practice Parameters and Technical - Network accessline 139
Equipment](https://gravitas.acr.org/PPTS/GetDocumentView?docId=118). - Network accessline 140
- American College of Radiology. [Practice Parameters and Technical Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards). Use the portal to verify the current applic - Network accessline 141
Standards](https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards).
radiology-skills/skills/radiology-acquisition-qc/scripts/validate_acquisition_qc_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 110
$sourceUrls = @( 'https://www.dicomstandard.org/current/', - Network accessline 111
'https://www.dicomstandard.org/current/', - Network accessline 112
'https://qibawiki.rsna.org/index.php/Profiles', - Network accessline 113
'https://doi.org/10.1148/QIBA/20231219', - Network accessline 114
'https://doi.org/10.1148/QIBA/20221215', - Network accessline 115
'https://doi.org/10.1148/QIBA/20230615', - Network accessline 116
'https://doi.org/10.1148/QIBA/20240115', - Network accessline 117
'https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards', - Network accessline 118
'https://www-pub.iaea.org/MTCD/Publications/PDF/Pub1394_web.pdf'
radiology-skills/skills/radiology-annotation/references/label-ontology-and-reference-standard.md
- Network accessline 119
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300) (uses “reference standard”). - Network accessline 120
- Bossuyt PM, et al. [STARD 2015](https://doi.org/10.1136/bmj.h5527). - Network accessline 121
- FDA–NIH. [BEST Resource](https://www.ncbi.nlm.nih.gov/books/NBK326791/). - Network accessline 122
- RSNA. [RadLex](https://radlex.org/). - Network accessline 123
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/).
radiology-skills/skills/radiology-annotation/references/longitudinal-lesion-and-exam-linkage.md
- Network accessline 117
- Eisenhauer EA, et al. [RECIST 1.1](https://doi.org/10.1016/j.ejca.2008.10.026). - Network accessline 118
- Seymour L, et al. [iRECIST](https://doi.org/10.1016/S1470-2045(17)30074-8). - Network accessline 119
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/).
radiology-skills/skills/radiology-annotation/references/noisy-weak-and-report-derived-labels.md
- Network accessline 114
- Irvin J, et al. [CheXpert](https://arxiv.org/abs/1901.07031) (original report-label uncertainty framework and dataset study). - Network accessline 115
- Ratner A, et al. [Snorkel](https://doi.org/10.14778/3157794.3157797) (original data-programming system). - Network accessline 116
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300).
radiology-skills/skills/radiology-annotation/tests/test_mask_geometry_semantics.py
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-bibliometrics/references/source-registry.md
- Network accessline 6
| Source | Version/status at access | Claim-use | Verification state | Accessed | |---|---|---|---|---| | [Crossref REST API](https://support.crossref.org/hc/en-us/articles/214320426-REST-API) | Living official documentation; member-deposit - Network accessline 7
|---|---|---|---|---| | [Crossref REST API](https://support.crossref.org/hc/en-us/articles/214320426-REST-API) | Living official documentation; member-deposited metadata | DOI/work metadata, filters and provenance; metadata completeness var - Network accessline 8
| [Crossref REST API](https://support.crossref.org/hc/en-us/articles/214320426-REST-API) | Living official documentation; member-deposited metadata | DOI/work metadata, filters and provenance; metadata completeness varies | `LIVE_VERIFICATI - Network accessline 9
| [Crossref metadata retrieval](https://www.crossref.org/documentation/retrieve-metadata/) | Updated 2025-10-16 at access | Retrieval routes, retraction metadata and snapshots | Verify update date and terms before extraction | 2026-08-23 | - Network accessline 10
| [OpenAlex Help Center](https://help.openalex.org/) | Living platform/API/data documentation | Open scholarly index coverage, entities and API routes | `LIVE_VERIFICATION_REQUIRED` for schema/coverage/pricing | 2026-08-23 | - Network accessline 11
| [ORCID collecting authenticated iDs](https://info.orcid.org/documentation/collecting-and-sharing-orcid-ids/) | Living ORCID guidance | Authenticated person identifiers; name-only matching is not recommended | Verify current API/privacy te - Network accessline 12
| [ROR Data Structure](https://ror.readme.io/docs/ror-data-structure) | Recommended Schema 2.1; v1 sunset in 2025 | Organization identifiers, aliases, location and schema-version handling | `LIVE_VERIFICATION_REQUIRED` for schema/API | 2026 - Network accessline 13
| [CWTS Leiden Ranking 2025 indicators](https://traditional.leidenranking.com/information/indicators) | Traditional Edition 2025 methodology | Full/fractional counting, field normalization and stability intervals | State scope; not a univer - Network accessline 14
| [Leiden Manifesto](https://doi.org/10.1038/520429a) | Nature comment, 2015 | Ten principles for responsible use of research metrics | Foundational, not a technical metric specification | 2026-08-23 | - Network accessline 15
| [DORA indicators guidance](https://sfdora.org/dora_indicators_guidance/) | Living responsible-indicators guidance, accessed 2026 | Contextual, transparent and responsible quantitative assessment | Verify current version | 2026-08-23 | - Network accessline 16
| [Clarivate Journal Citation Reports](https://clarivate.com/webofsciencegroup/solutions/journal-citation-reports/) | Dynamic commercial product; 2025 release described at access | JIF is journal-level and should not score articles or indiv - Network accessline 17
| [VOSviewer manual](https://www.vosviewer.com/documentation/Manual_VOSviewer_1.6.20.pdf) | Software manual v1.6.20 | Association-strength normalization, mapping, clustering and parameters | Verify installed/current software version | 2026- - Network accessline 18
| [Visualizing bibliometric networks](https://doi.org/10.1007/978-3-319-10377-8_13) | Method chapter, 2014 | Normalization, mapping, clustering and resolution dependence | Foundational method; record implementation version | 2026-08-23 | - Network accessline 19
| [NIH iCite](https://icite.od.nih.gov/) | Dynamic NIH bibliometrics platform | Citation indicators for covered NIH/PubMed-linked outputs | `LIVE_VERIFICATION_REQUIRED` for metric definitions/coverage | 2026-08-23 |
radiology-skills/skills/radiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 38
} foreach ($url in @( 'https://support.crossref.org/hc/en-us/articles/214320426-REST-API', - Network accessline 39
foreach ($url in @( 'https://support.crossref.org/hc/en-us/articles/214320426-REST-API', 'https://www.crossref.org/documentation/retrieve-metadata/', - Network accessline 40
'https://support.crossref.org/hc/en-us/articles/214320426-REST-API', - Network accessline 41
'https://www.crossref.org/documentation/retrieve-metadata/', - Network accessline 42
'https://help.openalex.org/', - Network accessline 43
'https://info.orcid.org/documentation/collecting-and-sharing-orcid-ids/', - Network accessline 44
'https://ror.readme.io/docs/ror-data-structure', - Network accessline 45
'https://traditional.leidenranking.com/information/indicators', - Network accessline 46
'https://doi.org/10.1038/520429a', - Network accessline 47
'https://sfdora.org/dora_indicators_guidance/', - Network accessline 48
'https://www.vosviewer.com/documentation/Manual_VOSviewer_1.6.20.pdf', - Network accessline 49
'https://icite.od.nih.gov/'
radiology-skills/skills/radiology-clinical-domain/references/acute-emergency-imaging-research.md
- Network accessline 229
| Research use | Authority/original source | URL | Last checked | State | |---|---|---|---|---| | condition-specific acute imaging pathway/version discovery | American College of Radiology, Appropriateness Criteria | https://www.acr.org/cli - Network accessline 230
|---|---|---|---|---| | condition-specific acute imaging pathway/version discovery | American College of Radiology, Appropriateness Criteria | https://www.acr.org/clinical-resources/clinical-tools-and-reference/appropriateness-criteria | 20 - Network accessline 231
| condition-specific acute imaging pathway/version discovery | American College of Radiology, Appropriateness Criteria | https://www.acr.org/clinical-resources/clinical-tools-and-reference/appropriateness-criteria | 2026-08-23 | official in - Network accessline 232
| trauma imaging pathway and performance-indicator discovery | American College of Surgeons Trauma Quality Programs, Best Practices Guidelines | https://www.facs.org/quality-programs/trauma/quality/best-practices-guidelines/ | 2026-08-23 | - Network accessline 233
| hyperacute stroke pathway/version discovery | American Heart Association/American Stroke Association, 2026 acute ischemic stroke guideline hub | https://professional.heart.org/en/guidelines-statements/2026-guideline-for-the-early-manageme - Network accessline 234
| emergency diagnostic-imaging research priorities | Academic Emergency Medicine 2015 consensus conference research agenda | https://pubmed.ncbi.nlm.nih.gov/27234978/ | 2026-08-23 | primary consensus publication; use as research framing, no - Network accessline 235
| early live evaluation of AI decision support and workflow/human factors | DECIDE-AI consensus statement | https://doi.org/10.1038/s41591-022-01772-9 | 2026-08-23 | primary reporting/design source available; check current extensions at use
radiology-skills/skills/radiology-clinical-domain/references/clinical-domain-routing.md
- Network accessline 95
[STARD 2015 explanation and elaboration](https://pmc.ncbi.nlm.nih.gov/articles/PMC5128957/)
radiology-skills/skills/radiology-clinical-domain/references/domain-playbooks.md
- Network accessline 109
| Use | Authority/source | Official or primary URL | Last checked | State | |---|---|---|---|---| | screening CT categories/version discovery | American College of Radiology, Lung-RADS | https://www.acr.org/clinical-resources/clinical-tools - Network accessline 110
|---|---|---|---|---| | screening CT categories/version discovery | American College of Radiology, Lung-RADS | https://www.acr.org/clinical-resources/clinical-tools-and-reference/reporting-and-data-systems/lung-rads | 2026-08-22 | official - Network accessline 111
| screening CT categories/version discovery | American College of Radiology, Lung-RADS | https://www.acr.org/clinical-resources/clinical-tools-and-reference/reporting-and-data-systems/lung-rads | 2026-08-22 | official page available; `LIVE_ - Network accessline 112
| thoracic tumour staging/version discovery | International Association for the Study of Lung Cancer, Staging Project | https://www.iaslc.org/science-research/scientific-projects/iaslc-staging-project-lung-cancer-thymic-tumors-and | 2026-08 - Network accessline 196
| Use | Authority/source | Official or primary URL | Last checked | State | |---|---|---|---|---| | adult high-/low-grade glioma response research | RANO 2.0 primary consensus publication, Journal of Clinical Oncology | https://ascopubs.org - Network accessline 197
|---|---|---|---|---| | adult high-/low-grade glioma response research | RANO 2.0 primary consensus publication, Journal of Clinical Oncology | https://ascopubs.org/doi/10.1200/JCO.23.01059 | 2026-08-22 | primary article available; scope/ve - Network accessline 198
| adult high-/low-grade glioma response research | RANO 2.0 primary consensus publication, Journal of Clinical Oncology | https://ascopubs.org/doi/10.1200/JCO.23.01059 | 2026-08-22 | primary article available; scope/version remain `LIVE_VER - Network accessline 199
| RANO family version discovery | Response Assessment in Neuro-Oncology group | https://rano.group/publications | 2026-08-22 | group publication portal available; disease-specific route remains `LIVE_VERIFICATION_REQUIRED` | - Network accessline 280
| Use | Authority/source | Official or primary URL | Last checked | State | |---|---|---|---|---| | liver surveillance/diagnosis/treatment-response version discovery | American College of Radiology, LI-RADS | https://www.acr.org/Clinical-Re - Network accessline 282
| liver surveillance/diagnosis/treatment-response version discovery | American College of Radiology, LI-RADS | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Reporting-and-Data-Systems/LI-RADS | 2026-08-22 | official pa - Network accessline 362
| Use | Authority/source | Official or primary URL | Last checked | State | |---|---|---|---|---| | breast terminology/categories/audit version discovery | American College of Radiology, BI-RADS | https://www.acr.org/Clinical-Resources/Clin - Network accessline 364
| breast terminology/categories/audit version discovery | American College of Radiology, BI-RADS | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Reporting-and-Data-Systems/BI-RADS | 2026-08-22 | official page identifie - Network accessline 445
| Use | Authority/source | Official or primary URL | Last checked | State | |---|---|---|---|---| | prostate MRI acquisition/interpretation version discovery | American College of Radiology with ESUR and AdMeTech, PI-RADS | https://www.acr. - Network accessline 447
| prostate MRI acquisition/interpretation version discovery | American College of Radiology with ESUR and AdMeTech, PI-RADS | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Reporting-and-Data-Systems/PI-RADS | 2026-08-2 - Network accessline 532
| Use | Authority/source | Official or primary URL | Last checked | State | |---|---|---|---|---| | standardized coronary CT reporting/version anchor | SCCT/ACC/ACR/NASCI, CAD-RADS 2.0 primary consensus | https://www.jacc.org/doi/10.1016/j. - Network accessline 534
| standardized coronary CT reporting/version anchor | SCCT/ACC/ACR/NASCI, CAD-RADS 2.0 primary consensus | https://www.jacc.org/doi/10.1016/j.jcmg.2022.07.002 | 2026-08-22 | primary consensus available; current version/applicability remain
radiology-skills/skills/radiology-clinical-domain/references/musculoskeletal-imaging-research.md
- Network accessline 252
| Research use | Authority/original source | URL | Last checked | State | |---|---|---|---|---| | modality/anatomy-specific acquisition and interpretation parameter discovery | ACR Practice Parameters and Technical Standards | https://www.a - Network accessline 253
|---|---|---|---|---| | modality/anatomy-specific acquisition and interpretation parameter discovery | ACR Practice Parameters and Technical Standards | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters - Network accessline 254
| modality/anatomy-specific acquisition and interpretation parameter discovery | ACR Practice Parameters and Technical Standards | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standar - Network accessline 255
| MSK consensus terminology and incidental-lesion framework discovery | Society of Skeletal Radiology, consensus papers | https://skeletalrad.org/ssr-consensus-papers/ | 2026-08-23 | official society index available; population and version - Network accessline 256
| adult incidental solitary bone-lesion framework example | SSR Bone-RADS primary consensus publication | https://doi.org/10.1007/s00256-022-04022-8 | 2026-08-23 | primary paper available; adult/solitary/incidental scope must not be expande - Network accessline 257
| outcome-domain and measurement-instrument development | OMERACT Handbook and MRI in Arthritis Working Group | https://omeract.org/handbook/ ; https://omeract.org/working-groups/mri/ | 2026-08-23 | official methodology and working-group pa - Network accessline 258
| longitudinal knee imaging cohort/protocol exemplar | NIH Osteoarthritis Initiative | https://www.nia.nih.gov/research/resource/osteoarthritis-initiative-oai | 2026-08-23 | official cohort resource; dataset release/protocol/visit must be f - Network accessline 259
| weight-bearing CT acquisition/measurement limitations | primary methodological review, *Skeletal Radiology* | https://doi.org/10.1007/s00256-022-04223-1 | 2026-08-23 | original methodological source available; not a universal protocol or
radiology-skills/skills/radiology-clinical-domain/references/nuclear-medicine-theranostics-research.md
- Network accessline 321
| Research use | Authority/original source | URL | Last checked | State | |---|---|---|---|---| | nuclear-medicine guideline and tracer/application version discovery | European Association of Nuclear Medicine, guidelines overview | https:// - Network accessline 322
|---|---|---|---|---| | nuclear-medicine guideline and tracer/application version discovery | European Association of Nuclear Medicine, guidelines overview | https://eanm.org/publications/guidelines/overview/ | 2026-08-23 | official index a - Network accessline 323
| nuclear-medicine guideline and tracer/application version discovery | European Association of Nuclear Medicine, guidelines overview | https://eanm.org/publications/guidelines/overview/ | 2026-08-23 | official index available; exact guidel - Network accessline 324
| current dosimetry-method source discovery | EANM Dosimetry guideline index | https://eanm.org/publications/guidelines/overview/dosimetry/ | 2026-08-23 | official index available; tracer/method/version is `LIVE_VERIFICATION_REQUIRED` | - Network accessline 325
| radiopharmaceutical-therapy dosimetry framework | International Atomic Energy Agency, *Dosimetry for Radiopharmaceutical Therapy* (2024) | https://doi.org/10.61092/iaea.xlzb-6h67 | 2026-08-23 | official monograph/DOI available; not a loca - Network accessline 326
| MIRD schema, pamphlet and software provenance discovery | SNMMI Committee on Medical Internal Radiation Dose | https://snmmi.org/Web/About/About-SNMMI/Committees/Committee-on-Medical-Internal-Radiation-Dose/Default.aspx | 2026-08-23 | off - Network accessline 327
| tracer-specific theranostic guideline example | joint EANM/SNMMI 177Lu-PSMA radioligand-therapy guideline | https://doi.org/10.1007/s00259-023-06255-8 | 2026-08-23 | primary guideline available; disease/agent/jurisdiction scope is `LIVE_V - Network accessline 328
| patient-specific 177Lu ligand dosimetry example | EANM Dosimetry Committee recommendations | https://doi.org/10.1007/s00259-022-05727-7 | 2026-08-23 | primary recommendations available; do not extrapolate across radionuclides/agents | - Network accessline 329
| quantitative FDG-PET response measurement profile | RSNA QIBA FDG-PET/CT Profile v1.14 (2023) | https://doi.org/10.1148/QIBA/20230615 | 2026-08-23 | official profile available; conformance and current status are `LIVE_VERIFICATION_REQUIRE - Network accessline 330
| FDG-PET response-framework origin | PERCIST 1.0 primary publication | https://doi.org/10.2967/jnumed.108.057307 | 2026-08-23 | primary source available; tracer/disease/protocol scope must be verified | - Network accessline 331
| PSMA-PET response-framework example | RECIP 1.0 international multicentre primary study | https://doi.org/10.2967/jnumed.121.263072 | 2026-08-23 | primary study available; do not generalise beyond validated population/tracer/therapy |
radiology-skills/skills/radiology-clinical-domain/references/pediatric-imaging-research.md
- Network accessline 280
| Research use | Authority/original source | URL | Last checked | State | |---|---|---|---|---| | pediatric protocol/dose rationale and body-size framing | US Food and Drug Administration, Pediatric X-ray Imaging | https://www.fda.gov/radia - Network accessline 281
|---|---|---|---|---| | pediatric protocol/dose rationale and body-size framing | US Food and Drug Administration, Pediatric X-ray Imaging | https://www.fda.gov/radiation-emitting-products/medical-imaging/pediatric-x-ray-imaging | 2026-08-2 - Network accessline 282
| pediatric protocol/dose rationale and body-size framing | US Food and Drug Administration, Pediatric X-ray Imaging | https://www.fda.gov/radiation-emitting-products/medical-imaging/pediatric-x-ray-imaging | 2026-08-23 | official page avai - Network accessline 283
| pediatric radiological-protection principles | International Commission on Radiological Protection, Publication 121 | https://www.icrp.org/publication.asp?id=ICRP+Publication+121 | 2026-08-23 | official publication record available; use a - Network accessline 284
| pediatric CT optimisation resources | Alliance for Radiation Safety in Pediatric Imaging, Image Gently | https://imagegently.org/Procedures/Computed-Tomography | 2026-08-23 | official campaign resource available; exact protocol remains lo - Network accessline 285
| sedation pathway/safety-source discovery | AAP/AAPD pediatric sedation clinical report, doi:10.1542/peds.2019-1000 | https://doi.org/10.1542/peds.2019-1000 | 2026-08-23 | primary report page states reaffirmed with reference updates in 202 - Network accessline 286
| rare-disease multicentre, registry and natural-history collaboration | NIH-funded Rare Diseases Clinical Research Network | https://www.rarediseasesnetwork.org/ | 2026-08-23 | official network entry available; exact consortium/protocol/da - Network accessline 287
| pediatric AI development/implementation and cross-age safety concerns | ACR/ESPR/SPR/SLARP/AOSPR/SPIN multisociety statement | https://doi.org/10.1007/s00247-025-06386-0 | 2026-08-23 | primary multisociety publication available; use as re - Network accessline 288
| pediatric and modality-specific practice-parameter discovery | American College of Radiology, Practice Parameters and Technical Standards | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Techni
radiology-skills/skills/radiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 73
$sourceUrls = @( 'https://www.acr.org/clinical-resources/clinical-tools-and-reference/reporting-and-data-systems/lung-rads', - Network accessline 74
'https://www.acr.org/clinical-resources/clinical-tools-and-reference/reporting-and-data-systems/lung-rads', - Network accessline 75
'https://www.iaslc.org/science-research/scientific-projects/iaslc-staging-project-lung-cancer-thymic-tumors-and', - Network accessline 76
'https://ascopubs.org/doi/10.1200/JCO.23.01059', - Network accessline 77
'https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Reporting-and-Data-Systems/LI-RADS', - Network accessline 78
'https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Reporting-and-Data-Systems/BI-RADS', - Network accessline 79
'https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Reporting-and-Data-Systems/PI-RADS', - Network accessline 80
'https://www.jacc.org/doi/10.1016/j.jcmg.2022.07.002', - Network accessline 81
'https://www.acr.org/clinical-resources/clinical-tools-and-reference/appropriateness-criteria', - Network accessline 82
'https://skeletalrad.org/ssr-consensus-papers/', - Network accessline 83
'https://www.fda.gov/radiation-emitting-products/medical-imaging/pediatric-x-ray-imaging', - Network accessline 84
'https://eanm.org/publications/guidelines/overview/'
radiology-skills/skills/radiology-consensus-guideline/references/source-registry.md
- Network accessline 7
| Authority/source | URL | Version/status | Accessed | Claim use | |---|---|---|---|---| | WHO Handbook for Guideline Development | https://www.who.int/publications/i/item/9789241548960 | official second edition, 2014, with linked additiona - Network accessline 8
|---|---|---|---|---| | WHO Handbook for Guideline Development | https://www.who.int/publications/i/item/9789241548960 | official second edition, 2014, with linked additional chapters | 2026-08-23 | scope, panel, COI, evidence, recommendati - Network accessline 9
| WHO Handbook for Guideline Development | https://www.who.int/publications/i/item/9789241548960 | official second edition, 2014, with linked additional chapters | 2026-08-23 | scope, panel, COI, evidence, recommendation, stakeholder and pu - Network accessline 10
| GRADE EtD for clinical practice guidelines | https://www.bmj.com/content/353/bmj.i2089 | peer-reviewed primary methods paper, BMJ 2016;353:i2089 | 2026-08-23 | structured judgments for effects, certainty, values, resources, equity, accept - Network accessline 11
| NICE Developing Guidelines Manual | https://www.nice.org.uk/process/pmg20 | official manual, last updated 23 October 2025 | 2026-08-23 | committee, evidence review, economics, consultation, implementation, surveillance and updating | - Network accessline 12
| RAND/UCLA Appropriateness Method User's Manual | https://www.rand.org/pubs/monograph_reports/MR1269.html | RAND monograph MR-1269-DG-XII/RE, 2001 | 2026-08-23 | structured evidence-plus-panel appropriateness method and disagreement handli - Network accessline 13
| CREDES Delphi guidance | https://doi.org/10.1177/0269216317690685 | peer-reviewed methodological guidance, 2017 | 2026-08-23 | prespecified Delphi conduct, stopping, consensus and transparent reporting | - Network accessline 14
| ACCORD consensus reporting guideline | https://doi.org/10.1371/journal.pmed.1004326 | peer-reviewed reporting guideline, PLOS Medicine 2024; full text and stated scope inspected | 2026-09-04 | reporting across consensus purposes, includin - Network accessline 15
| ACR Practice Parameters and Technical Standards | https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards | official ACR live program page | 2026-08-23 | radiology product distinctio - Network accessline 16
| ACR Appropriateness Criteria Rating Process | https://cs.acr.org/-/media/ACR/Files/Appropriateness-Criteria/Rating-Round-Information.pdf | official ACR process document, revised April 2021 | 2026-08-23 | anonymized rounds, median/disagree
radiology-skills/skills/radiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 64
$sourceText = Get-Content -LiteralPath (Join-Path $skillRoot 'references/source-registry.md') -Raw $sourceUrls = @( 'https://www.who.int/publications/i/item/9789241548960', - Network accessline 65
$sourceUrls = @( 'https://www.who.int/publications/i/item/9789241548960', 'https://www.bmj.com/content/353/bmj.i2089', - Network accessline 66
'https://www.who.int/publications/i/item/9789241548960', - Network accessline 67
'https://www.bmj.com/content/353/bmj.i2089', - Network accessline 68
'https://www.nice.org.uk/process/pmg20', - Network accessline 69
'https://www.rand.org/pubs/monograph_reports/MR1269.html', - Network accessline 70
'https://doi.org/10.1177/0269216317690685', - Network accessline 71
'https://doi.org/10.1371/journal.pmed.1004326', - Network accessline 72
'https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/Practice-Parameters-and-Technical-Standards', - Network accessline 73
'https://cs.acr.org/-/media/ACR/Files/Appropriateness-Criteria/Rating-Round-Information.pdf'
radiology-skills/skills/radiology-data/references/availability-and-fair.md
- Network accessline 3
## Data Availability statement — templates - **Public:** *"The imaging data are available in The Cancer Imaging Archive (https://doi.org/XX.XXXX/tcia.XXXX). Radiomic feature values and analysis code are - Network accessline 4
- **Public:** *"The imaging data are available in The Cancer Imaging Archive (https://doi.org/XX.XXXX/tcia.XXXX). Radiomic feature values and analysis code are available at Zenodo (DOI: 10.5281/zenodo.XXXX). RNA-seq data are in GEO (GSE - Network accessline 5
(https://doi.org/XX.XXXX/tcia.XXXX). Radiomic feature values and analysis code are - Network accessline 15
## Code/Model Availability — template *"Code to reproduce the analyses is available at https://github.com/…, archived at Zenodo - Network accessline 16
*"Code to reproduce the analyses is available at https://github.com/…, archived at Zenodo - Network accessline 53
## Dataset citations (DataCite style) `Creator(s). (Year). Title [Data set]. Repository. https://doi.org/…` — cite public datasets - Network accessline 54
`Creator(s). (Year). Title [Data set]. Repository. https://doi.org/…` — cite public datasets
radiology-skills/skills/radiology-data/references/data-lifecycle-management-plan.md
- Network accessline 89
| Source | Status checked 2026-08-23 | Rule used here | |---|---|---| | [NIH Writing a Data Management and Sharing Plan](https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/writing-dms-plan) | current officia - Network accessline 90
|---|---|---| | [NIH Writing a Data Management and Sharing Plan](https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/writing-dms-plan) | current official NIH page; 2026 format required | policy passport, curr - Network accessline 91
| [NIH Writing a Data Management and Sharing Plan](https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/writing-dms-plan) | current official NIH page; 2026 format required | policy passport, current format/ele - Network accessline 92
| [NIH Final DMS Policy, NOT-OD-21-013](https://grants.nih.gov/grants/guide/notice-files/NOT-OD-21-013.html) | governing 2023 policy; format updated separately | planning, preservation and sharing obligation | - Network accessline 93
| [FAIR Guiding Principles](https://doi.org/10.1038/sdata.2016.18) | stable primary publication | findable, accessible, interoperable and reusable stewardship properties | - Network accessline 94
| [DICOM PS3.15](https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html) | live standard; verify edition at release | imaging confidentiality profiles and de-identification planning |
radiology-skills/skills/radiology-data/references/dicom-deidentification.md
- Network accessline 127
- DICOM Standards Committee. [DICOM PS3.15, current edition, Annex E: Attribute Confidentiality Profiles](https://dicom.nema.org/medical/dicom/current/output/html/part15.html). The standard is - Network accessline 128
Profiles](https://dicom.nema.org/medical/dicom/current/output/html/part15.html). The standard is
radiology-skills/skills/radiology-data/references/outcome-and-followup-data.md
- Network accessline 100
- Schemper M, Smith TL. [A note on quantifying follow-up in studies of failure time](https://pubmed.ncbi.nlm.nih.gov/8889347/). - Network accessline 101
- [REMARK explanation and elaboration: follow-up reporting](https://pmc.ncbi.nlm.nih.gov/articles/PMC3362748/). - Network accessline 102
- Lévesque LE, et al. [Problem of immortal time bias in cohort studies](https://www.bmj.com/content/340/bmj.b5087). - Network accessline 103
- [Imputation and missing indicators in development and deployment of clinical prediction models: simulation study](https://pmc.ncbi.nlm.nih.gov/articles/PMC10515473/).
radiology-skills/skills/radiology-data/tests/test_dicom_deidentification_contracts.py
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-deep-learning/references/foundation-model-data-genealogy-and-privacy.md
- Network accessline 74
- NIST. [Adversarial Machine Learning: A Taxonomy and Terminology of Attacks and Mitigations (AI 100-2e2025)](https://www.nist.gov/publications/adversarial-machine-learning-taxonomy-and-terminology-attacks-and-mitigations-0). - Network accessline 75
Mitigations (AI 100-2e2025)](https://www.nist.gov/publications/adversarial-machine-learning-taxonomy-and-terminology-attacks-and-mitigations-0). - Network accessline 76
- NIST. [Artificial Intelligence Risk Management Framework: Generative Artificial Intelligence Profile (AI 600-1)](https://www.nist.gov/publications/artificial-intelligence-risk-management-framework-generative-artificial-intelligence). - - Network accessline 77
Profile (AI 600-1)](https://www.nist.gov/publications/artificial-intelligence-risk-management-framework-generative-artificial-intelligence). - Network accessline 78
- EDPB. [Anonymisation and pseudonymisation](https://www.edpb.europa.eu/topics/ai-and-technology/anonymisation-pseudonymisation_en).
radiology-skills/skills/radiology-deep-learning/references/interpretability-uncertainty.md
- Network accessline 154
- Prinster et al. [JAWS-X: Addressing efficiency bottlenecks of conformal prediction under distribution shift](https://proceedings.mlr.press/v202/prinster23a.html). - Network accessline 155
distribution shift](https://proceedings.mlr.press/v202/prinster23a.html). - Network accessline 156
- Gibbs et al. [Conformal prediction with conditional guarantees](https://academic.oup.com/jrsssb/article/87/4/1100/8058684). - Network accessline 158
uncertainty quantification](https://doi.org/10.48550/arXiv.2107.07511).
radiology-skills/skills/radiology-deep-learning/tests/test_foundation_boundary_contracts.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-design/references/primary-imaging-study-protocol-and-preregistration.md
- Network accessline 178
- SPIRIT–CONSORT Group. [Published SPIRIT 2025 and CONSORT 2025 statements](https://www.consort-spirit.org/published-statements). - Network accessline 179
- WHO. [Trial Registration Data Set](https://www.who.int/tools/clinical-trials-registry-platform/network/who-data-set). - Network accessline 180
- ClinicalTrials.gov. [Protocol Registration Data Element Definitions](https://clinicaltrials.gov/policy/protocol-definitions). - Network accessline 181
- Center for Open Science. [OSF Registries](https://osf.io/registries/). - Network accessline 182
- Bossuyt PM, et al. [STARD 2015](https://doi.org/10.1136/bmj.h5527). - Network accessline 183
- Collins GS, et al. [TRIPOD+AI](https://doi.org/10.1136/bmj-2023-078378). - Network accessline 184
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300).
radiology-skills/skills/radiology-design/references/registered-reports-ppi-and-equity.md
- Network accessline 89
- Center for Open Science. [Registered Reports](https://www.cos.io/initiatives/registered-reports) - Network accessline 90
(verified 2026-08-23; framework and qualifying features, not a substitute for venue policy). - OSF. [Registrations](https://help.osf.io/article/330-welcome-to-registrations) (verify platform workflow at use). - Network accessline 91
- OSF. [Registrations](https://help.osf.io/article/330-welcome-to-registrations) (verify platform - Network accessline 92
workflow at use). - SPIRIT–CONSORT Group. [Patient and public involvement](https://www.consort-spirit.org/item11-patient-publicinvolvement) (verify current checklist wording at protocol/report freeze). - Network accessline 93
- SPIRIT–CONSORT Group. [Patient and public involvement](https://www.consort-spirit.org/item11-patient-publicinvolvement) - Network accessline 94
(verify current checklist wording at protocol/report freeze). - World Medical Association. [Declaration of Helsinki, 2024](https://www.wma.net/policies-post/wma-declaration-of-helsinki/). - EQUATOR. [GRIPP2 reporting checklists](https://www - Network accessline 95
- World Medical Association. [Declaration of Helsinki, 2024](https://www.wma.net/policies-post/wma-declaration-of-helsinki/). - Network accessline 96
- EQUATOR. [GRIPP2 reporting checklists](https://www.equator-network.org/reporting-guidelines/gripp2-reporting-checklists-tools-to-improve-reporting-of-patient-and-public-involvement-in-research/).
radiology-skills/skills/radiology-design/references/tasks/detection-localization.md
radiology-skills/skills/radiology-design/references/tasks/diagnosis-triage.md
- Network accessline 107
- Bossuyt PM, et al. [STARD 2015](https://doi.org/10.1136/bmj.h5527). - Network accessline 108
- Sounderajah V, et al. [STARD-AI](https://doi.org/10.1038/s41591-025-03953-8). - Network accessline 109
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300). - Network accessline 110
- Vasey B, et al. [DECIDE-AI](https://doi.org/10.1038/s41591-022-01772-9).
radiology-skills/skills/radiology-design/references/tasks/prognosis-risk.md
- Network accessline 115
- Collins GS, et al. [TRIPOD+AI](https://doi.org/10.1136/bmj-2023-078378). - Network accessline 116
- Moons KGM, et al. [PROBAST+AI](https://doi.org/10.1136/bmj-2024-082505). - Network accessline 117
- Riley RD, et al. [Minimum sample size for prediction-model development](https://doi.org/10.1136/bmj.m441).
radiology-skills/skills/radiology-design/references/tasks/reconstruction-enhancement.md
- Network accessline 103
- RSNA QIBA. [Profiles and conformance resources](https://qibawiki.rsna.org/index.php/Profiles). - Network accessline 104
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 105
- Sullivan DC, et al. [Metrology standards for quantitative imaging biomarkers](https://doi.org/10.1148/radiol.2015142202). - Network accessline 106
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300).
radiology-skills/skills/radiology-design/references/tasks/report-generation-vlm.md
radiology-skills/skills/radiology-design/references/tasks/response-longitudinal.md
- Network accessline 102
- Eisenhauer EA, et al. [RECIST 1.1](https://doi.org/10.1016/j.ejca.2008.10.026). - Network accessline 103
- Seymour L, et al. [iRECIST](https://doi.org/10.1016/S1470-2045(17)30074-8). - Network accessline 104
- ICH. [E9(R1) Estimands and Sensitivity Analysis](https://database.ich.org/sites/default/files/E9-R1_Step4_Guideline_2019_1203.pdf). - Network accessline 105
- Collins GS, et al. [TRIPOD+AI](https://doi.org/10.1136/bmj-2023-078378).
radiology-skills/skills/radiology-design/references/tasks/segmentation-quantification.md
- Network accessline 108
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300). - Network accessline 109
- Taha AA, Hanbury A. [Metrics for evaluating 3D medical image segmentation](https://doi.org/10.1186/s12880-015-0068-x). - Network accessline 110
- RSNA QIBA. [Profiles and conformance resources](https://qibawiki.rsna.org/index.php/Profiles). - Network accessline 111
- DICOM Standards Committee. [Current DICOM Standard](https://www.dicomstandard.org/current/). - Network accessline 112
- Sullivan DC, et al. [Metrology standards for quantitative imaging biomarkers](https://doi.org/10.1148/radiol.2015142202).
radiology-skills/skills/radiology-design/references/tasks/synthetic-imaging-generation.md
- Network accessline 92
- NIST. [Generative AI Profile (AI 600-1)](https://www.nist.gov/publications/artificial-intelligence-risk-management-framework-generative-artificial-intelligence). - Network accessline 93
- NIST. [Adversarial Machine Learning taxonomy (AI 100-2e2025)](https://www.nist.gov/publications/adversarial-machine-learning-taxonomy-and-terminology-attacks-and-mitigations-0). - Network accessline 94
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300).
radiology-skills/skills/radiology-design/tests/test_methodology_p1_contracts.py
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-dissemination/references/source-registry.md
- Network accessline 7
| Source | Version/status at access | Claim-use | Verification state | Accessed | |---|---|---|---|---| | [RSNA Abstract Submission](https://www.rsna.org/annual-meeting/abstract-submission) | Dynamic 2026 meeting page; submissions closed at - Network accessline 8
|---|---|---|---|---| | [RSNA Abstract Submission](https://www.rsna.org/annual-meeting/abstract-submission) | Dynamic 2026 meeting page; submissions closed at access | Meeting categories, review, copyright license and disclosure context | ` - Network accessline 9
| [RSNA Abstract Submission](https://www.rsna.org/annual-meeting/abstract-submission) | Dynamic 2026 meeting page; submissions closed at access | Meeting categories, review, copyright license and disclosure context | `LIVE_VERIFICATION_REQU - Network accessline 10
| [RSNA Faculty and Presenter Resources](https://www.rsna.org/annual-meeting/attendee-resources/faculty-and-presenter-resources) | Dynamic RSNA 2026 resources; some instructions pending | Poster/presentation templates, AI disclosure and pre - Network accessline 11
| [NIH Plain Language at NIH](https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/clear-communication/plain-language-nih) | Official page, reviewed 2025-02-21 | Plain language is clear, accurate commu - Network accessline 12
| [NIH Return of Research Results](https://osp.od.nih.gov/policies/return-of-research-results/) | Policy-development process announced for 2026; not a completed universal mandate | Participant-facing aggregate-results planning and policy-st - Network accessline 13
| [Cochrane Handbook v6.5, reporting and plain-language summaries](https://training.cochrane.org/handbook/current/chapter-iii) | Handbook v6.5, 2024 | Stand-alone PLS; objectives, findings, caveats and conclusions remain consistent with ful - Network accessline 14
| [WHO EVIPNet approach](https://www.who.int/initiatives/evidence-informed-policy-network/the-evipnet-approach) | Current WHO programme page | Policy evidence must be accessible, locally contextualized and include implementation/financial c - Network accessline 15
| [WHO policy brief template](https://iris.who.int/handle/10665/375770) | WHO EMRO template, 2024 | Policy problem/options, evidence, implementation, conflicts and sources | Stable publication; verify local policy process | 2026-08-23 | - Network accessline 16
| [ICMJE Journals and the Media](https://www.icmje.org/recommendations/browse/publishing-and-editorial-issues/journals-and-the-media.html) | Living recommendation | Embargo/media accuracy and limits on prepublication publicity | `LIVE_VERIF - Network accessline 17
| [WCAG 2.2](https://www.w3.org/TR/2024/REC-WCAG22-20241212/) | W3C Recommendation, 2024-12-12 | Perceivable, operable, understandable and robust web communication | Use exact version; full conformance requires artifact testing | 2026-08-23 - Network accessline 18
| [Creative Commons attribution practices](https://wiki.creativecommons.org/wiki/Best_practices_for_attribution) | Living CC guidance | Title/author/source/license attribution for CC material | Verify the asset's actual license and version - Network accessline 19
| [DICOM PS3.15 Annex E](https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html) | Current DICOM standard | Attribute confidentiality profiles; metadata de-identification context | `LIVE_VERIFICATION_REQUIRED` for c - Network accessline 20
| [RSNA Removing PHI from Images](https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf) | RSNA educational guidance | Presentation crop/black-bar warning and imaging PHI workflow | Apply with institutional privacy policy |
radiology-skills/skills/radiology-dissemination/scripts/validate_dissemination_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 55
foreach ($url in @( 'https://www.rsna.org/annual-meeting/abstract-submission', - Network accessline 56
'https://www.rsna.org/annual-meeting/abstract-submission', - Network accessline 57
'https://www.nih.gov/institutes-nih/nih-office-director/office-communications-public-liaison/clear-communication/plain-language-nih', - Network accessline 58
'https://osp.od.nih.gov/policies/return-of-research-results/', - Network accessline 59
'https://training.cochrane.org/handbook/current/chapter-iii', - Network accessline 60
'https://www.who.int/initiatives/evidence-informed-policy-network/the-evipnet-approach', - Network accessline 61
'https://www.icmje.org/recommendations/browse/publishing-and-editorial-issues/journals-and-the-media.html', - Network accessline 62
'https://www.w3.org/TR/2024/REC-WCAG22-20241212/', - Network accessline 63
'https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html', - Network accessline 64
'https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf'
radiology-skills/skills/radiology-ethics/references/approval-consent.md
- Network accessline 90
[OHRP, Coded Private Information or Biospecimens Used in Research (2018)](https://www.hhs.gov/ohrp/coded-private-information-or-biospecimens-used-research.html)
radiology-skills/skills/radiology-ethics/references/biosafety-biosecurity-review.md
- Network accessline 57
Policies in this area change. Verify the current institutional and jurisdictional source at the time of use. For example, the NIH Office of Science Policy maintains a live biosafety/biosecurity policy entry point at <https://osp.od.nih.gov/ - Network accessline 58
use. For example, the NIH Office of Science Policy maintains a live biosafety/biosecurity policy entry point at <https://osp.od.nih.gov/policies/biosafety-and-biosecurity-policy/>; it is not proof that a specific project is covered, exempt - Network accessline 59
point at <https://osp.od.nih.gov/policies/biosafety-and-biosecurity-policy/>; it is not proof that a - Network accessline 61
<https://www.who.int/publications/i/item/9789240011434>. Local authority remains controlling.
radiology-skills/skills/radiology-ethics/references/ethics-routing-and-stop-gates.md
- Network accessline 93
- US human-subjects oversight: <https://www.hhs.gov/ohrp/> - Network accessline 94
- US animal-welfare/IACUC overview: <https://olaw.nih.gov/node/135> - Network accessline 95
- US recombinant/synthetic nucleic-acid and IBC information: <https://osp.od.nih.gov/policies/biosafety-and-biosecurity-policy/> - Network accessline 96
- WHO risk-based laboratory biosafety guidance: <https://www.who.int/publications/i/item/9789240011434>
radiology-skills/skills/radiology-ethics/scripts/validate_ethics_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-experiment-design/scripts/validate_experiment_design_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-figure/scripts/audit_figure_export.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-figure/tests/test_audit_figure_export.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-frontier/references/evidence-layer.md
- Network accessline 51
- [Radiology: Artificial Intelligence author instructions](https://pubs.rsna.org/page/ai/author-instructions)
radiology-skills/skills/radiology-grant/references/call-and-compliance-gate.md
- Network accessline 153
- NSFC 2026 annual guide landing page: https://www.nsfc.gov.cn/p1/2931/3971/3972/qy2026.html - Network accessline 154
https://www.nsfc.gov.cn/p1/2931/3971/3972/qy2026.html - Network accessline 155
- NSFC 2026 application rules page and official PDF: https://www.nsfc.gov.cn/p1/2931/3971/3974/sqgd2.html and https://www.nsfc.gov.cn/u/cms/www/202601/161125020ts3.pdf - Network accessline 156
https://www.nsfc.gov.cn/p1/2931/3971/3974/sqgd2.html - Network accessline 157
and https://www.nsfc.gov.cn/u/cms/www/202601/161125020ts3.pdf - Network accessline 158
- NSFC 2026 reform measures: https://www.nsfc.gov.cn/p1/2931/3971/3973/2026ndgjzrkxjjggjc.html - NSFC 2026 application and completion notice, including the generative-AI boundary: - Network accessline 159
https://www.nsfc.gov.cn/p1/2931/3971/3973/2026ndgjzrkxjjggjc.html - Network accessline 160
- NSFC 2026 application and completion notice, including the generative-AI boundary: https://www.nsfc.gov.cn/p1/3381/2824/99667.html - NSFC 2026 application restructure notice: - Network accessline 161
https://www.nsfc.gov.cn/p1/3381/2824/99667.html - Network accessline 162
- NSFC 2026 application restructure notice: https://www.nsfc.gov.cn/p1/3381/2821/99242.html - Revised NSFC Regulations, State Council Order No. 796: - Network accessline 163
https://www.nsfc.gov.cn/p1/3381/2821/99242.html - Network accessline 164
- Revised NSFC Regulations, State Council Order No. 796: https://www.nsfc.gov.cn/p1/2871/2873/69510.html - NIH simplified review framework, NOT-OD-24-010: - Network accessline 165
https://www.nsfc.gov.cn/p1/2871/2873/69510.html - Network accessline 166
- NIH simplified review framework, NOT-OD-24-010: https://grants.nih.gov/grants/guide/notice-files/NOT-OD-24-010.html - NIH current Write Application guidance and authority hierarchy: - Network accessline 167
https://grants.nih.gov/grants/guide/notice-files/NOT-OD-24-010.html - Network accessline 169
https://grants.nih.gov/grants/how-to-apply-application-guide/format-and-write/write-your-application.htm
radiology-skills/skills/radiology-grant/references/grant-architecture.md
radiology-skills/skills/radiology-grant/references/imaging-methodology-router.md
- Network accessline 103
- CLAIM 2024: https://doi.org/10.1148/ryai.240300 - Network accessline 104
- STARD-AI: https://doi.org/10.1038/s41591-025-03953-8 - Network accessline 105
- TRIPOD+AI: https://doi.org/10.1136/bmj-2023-078378 - Network accessline 106
- PROBAST+AI: https://doi.org/10.1136/bmj-2024-082505 - Network accessline 107
- FUTURE-AI: https://doi.org/10.1136/bmj-2024-081554 - Network accessline 108
- MI-CLAIM-GEN: https://doi.org/10.1038/s41591-024-03470-0 - Network accessline 109
- METRICS: https://pubmed.ncbi.nlm.nih.gov/38228979/ - Network accessline 110
- IBSI standardized filters: https://doi.org/10.1148/radiol.231319 - Network accessline 111
- RQS 2.0: https://doi.org/10.1038/s41571-025-01067-1 - Network accessline 112
- DECIDE-AI: https://doi.org/10.1038/s41591-022-01772-9 - Network accessline 113
- Quantitative-imaging biomarker metrology: https://doi.org/10.1148/radiol.2015142202 - Network accessline 114
- DICOM current standard: https://www.dicomstandard.org/current/ - Network accessline 115
- QIBA Profiles: https://qibawiki.rsna.org/index.php/Profiles
radiology-skills/skills/radiology-grant/references/international-grants.md
- Network accessline 186
- NIH international-collaboration structure, NOT-OD-25-155: https://grants.nih.gov/grants/guide/notice-files/NOT-OD-25-155.html - Network accessline 187
https://grants.nih.gov/grants/guide/notice-files/NOT-OD-25-155.html - Network accessline 188
- NIH direct R01 eligibility and foreign-subaward distinction, PA-25-301 Section III (checked 2026-09-04): https://grants.nih.gov/grants/guide/pa-files/PA-25-301.html - NIH foreign-organization application guidance (checked 2026-09-04): - Network accessline 189
https://grants.nih.gov/grants/guide/pa-files/PA-25-301.html - Network accessline 190
- NIH foreign-organization application guidance (checked 2026-09-04): https://grants.nih.gov/new-to-nih/information-for/foreign-grants - NIH clinical-trial definition and decision tool (checked 2026-09-04): - Network accessline 191
https://grants.nih.gov/new-to-nih/information-for/foreign-grants - Network accessline 192
- NIH clinical-trial definition and decision tool (checked 2026-09-04): https://grants.nih.gov/policy-and-compliance/policy-topics/clinical-trials/definition - NIH BESH classification implementation and due-date transition, NOT-OD-26-067 - Network accessline 193
https://grants.nih.gov/policy-and-compliance/policy-topics/clinical-trials/definition - Network accessline 194
- NIH BESH classification implementation and due-date transition, NOT-OD-26-067 (checked 2026-09-04): https://grants.nih.gov/grants/guide/notice-files/NOT-OD-26-067.html - PF5 PA-26-002 full announcement, official Grants.gov attachment (c - Network accessline 195
https://grants.nih.gov/grants/guide/notice-files/NOT-OD-26-067.html - Network accessline 196
- PF5 PA-26-002 full announcement, official Grants.gov attachment (checked 2026-09-04): https://files.simpler.grants.gov/opportunities/3df028f3-f97a-4cdf-9359-1c6515d091ce/attachments/32095b88-f093-488f-aa71-1b39ce517067/PA-26-002-Full-An - Network accessline 197
https://files.simpler.grants.gov/opportunities/3df028f3-f97a-4cdf-9359-1c6515d091ce/attachments/32095b88-f093-488f-aa71-1b39ce517067/PA-26-002-Full-Announcement.html - Network accessline 198
- NIH PF5 activity-code overview: https://grants.nih.gov/funding/activity-codes/PF5 - ERC 2026 proposal/evaluation changes: - Network accessline 199
https://grants.nih.gov/funding/activity-codes/PF5 - Network accessline 200
- ERC 2026 proposal/evaluation changes: https://erc.europa.eu/news-events/news/changes-2026-and-2027-work-programmes - ERC Synergy host exception and three-step evaluation (checked 2026-09-04): - Network accessline 201
https://erc.europa.eu/news-events/news/changes-2026-and-2027-work-programmes - Network accessline 202
- ERC Synergy host exception and three-step evaluation (checked 2026-09-04): https://erc.europa.eu/apply-grant/synergy-grant - Wellcome applicant/organization eligibility: - Network accessline 203
https://erc.europa.eu/apply-grant/synergy-grant - Network accessline 205
https://wellcome.org/research-funding/guidance/prepare-to-apply/eligibility-information-grant-applicants
radiology-skills/skills/radiology-grant/references/radiology-feasibility-audit.md
- Network accessline 184
- CLAIM 2024 update for AI in medical imaging: https://doi.org/10.1148/ryai.240300 - Network accessline 185
https://doi.org/10.1148/ryai.240300 - Network accessline 186
- STARD-AI for AI-centered diagnostic-accuracy studies: https://doi.org/10.1038/s41591-025-03953-8 - DECIDE-AI for early-stage clinical evaluation of AI decision support: - Network accessline 187
https://doi.org/10.1038/s41591-025-03953-8 - Network accessline 188
- DECIDE-AI for early-stage clinical evaluation of AI decision support: https://doi.org/10.1038/s41591-022-01772-9 - Quantitative imaging biomarker metrology framework: - Network accessline 189
https://doi.org/10.1038/s41591-022-01772-9 - Network accessline 190
- Quantitative imaging biomarker metrology framework: https://doi.org/10.1148/radiol.2015142202 - DICOM current standard: - Network accessline 191
https://doi.org/10.1148/radiol.2015142202 - Network accessline 192
- DICOM current standard: https://www.dicomstandard.org/current/ - RSNA QIBA profiles for acquisition-to-measurement claims: - Network accessline 193
https://www.dicomstandard.org/current/ - Network accessline 195
https://qibawiki.rsna.org/index.php/Profiles
radiology-skills/skills/radiology-grant/references/source-registry.md
- Network accessline 9
| ID | Source | URL | Accessed | Authority | Applicability / refresh rule | |---|---|---|---|---|---| | N24-1 | 2024 annual application rules | https://www.nsfc.gov.cn/p1/2891/3683/2024sqgd.html | 2026-08-28 | official annual rule | histori - Network accessline 10
|---|---|---|---|---|---| | N24-1 | 2024 annual application rules | https://www.nsfc.gov.cn/p1/2891/3683/2024sqgd.html | 2026-08-28 | official annual rule | historical 2024 only | | N24-2 | 2024 reform measures | https://www.nsfc.gov.cn/p1/ - Network accessline 11
| N24-1 | 2024 annual application rules | https://www.nsfc.gov.cn/p1/2891/3683/2024sqgd.html | 2026-08-28 | official annual rule | historical 2024 only | - Network accessline 12
| N24-2 | 2024 reform measures | https://www.nsfc.gov.cn/p1/2891/3682/2024ndgjzrkxjjg.html | 2026-08-28 | official annual reform | historical 2024 only | - Network accessline 13
| N24-3 | 2024 centralized result notice | https://www.nsfc.gov.cn/p1/3381/2824/66854.html | 2026-08-28 | official result | descriptive counts, not probability | - Network accessline 14
| N25-1 | 2025 annual application rules | https://www.nsfc.gov.cn/p1/2931/3391/3398/sqgd.html | 2026-08-28 | official annual rule | historical 2025 only | - Network accessline 15
| N25-2 | 2025 reform measures | https://www.nsfc.gov.cn/p1/2931/3391/3397/2025ndgjzrkxjjg.html | 2026-08-28 | official annual reform | historical 2025 only | - Network accessline 16
| N25-3 | 2025 centralized result notice | https://www.nsfc.gov.cn/p1/3381/2824/94026.html | 2026-09-04 | official result | A/B/C already used for 2025; descriptive counts, not probability | - Network accessline 17
| N25-4 | Medicine Young A / former Distinguished Young notice | https://www.nsfc.gov.cn/p1/4085/100336.html | 2026-09-04 | official dated notice | title and 2025-03-11 date verify historical alias; video content unavailable | - Network accessline 18
| N25-5 | CAS IAP 2025 application implementation notice | https://iap.cas.cn/gb/xwdt/tzgg/202501/t20250124_7522908.html | 2026-09-04 | institutional implementation | records 2025 system A/B/C aliases and early-guide lag; not controlling el - Network accessline 19
| N26-1 | 2026 annual guide landing page | https://www.nsfc.gov.cn/p1/2931/3971/3972/qy2026.html | 2026-08-28 | official annual guide | live-recheck for 2026 amendments | - Network accessline 20
| N26-2 | 2026 application-rules page | https://www.nsfc.gov.cn/p1/2931/3971/3974/sqgd2.html | 2026-08-28 | official annual rule | exact programme and live form still required | - Network accessline 21
| N26-3 | 2026 official application-rules PDF | https://www.nsfc.gov.cn/u/cms/www/202601/161125020ts3.pdf | 2026-08-28 | official annual artifact | 15-page snapshot; AI rule is in annual notice | - Network accessline 22
| N26-4 | 2026 application and completion notice | https://www.nsfc.gov.cn/p1/3381/2824/99667.html | 2026-09-04 | official controlling notice | AI clause rechecked; other cycle parameters require live use-time verification | - Network accessline 23
| N26-5 | 2026 application slimming/restructure notice | https://www.nsfc.gov.cn/p1/3381/2821/99242.html | 2026-08-28 | official reform notice | three blocks/30 pages only General and Young C | - Network accessline 24
| N26-6 | application-form FAQ | https://www.nsfc.gov.cn/p1/2961/2962/3642/sqs.html | 2026-09-04 | official dynamic FAQ | AI wording rechecked; page warns policy may change | - Network accessline 25
| N26-7 | applicant-condition FAQ | https://www.nsfc.gov.cn/p1/2961/2962/3643/tj.html | 2026-08-28 | official dynamic FAQ | conflicts with broader 2026 text for in-service postgraduate case | - Network accessline 26
| N26-8 | research-attribute FAQ | https://www.nsfc.gov.cn/p1/2961/2962/4089/yjsx.html | 2026-08-28 | official dynamic FAQ | two attributes since 2024; live-recheck | - Network accessline 27
| N26-9 | application-limit FAQ | https://www.nsfc.gov.cn/p1/2961/2962/3644/xx.html | 2026-08-28 | official dynamic FAQ | applicant-specific calculation required | - Network accessline 28
| N26-10 | budget-preparation FAQ | https://www.nsfc.gov.cn/p1/2961/2965/3658/ysbz.html | 2026-08-28 | official dynamic FAQ | programme/cycle budget regime required | - Network accessline 29
| N26-11 | 2026 centralized result notice | https://www.nsfc.gov.cn/p1/3381/2822/141011.html | 2026-08-28 | official result | listed programme classes only; not probability | - Network accessline 33
| ID | Source | URL | Accessed | Authority | Applicability / refresh rule | |---|---|---|---|---|---| | R-1 | revised Regulations on the National Natural Science Fund | https://www.nsfc.gov.cn/p1/2871/2873/69510.html | 2026-08-28 | State Co - Network accessline 34
|---|---|---|---|---|---| | R-1 | revised Regulations on the National Natural Science Fund | https://www.nsfc.gov.cn/p1/2871/2873/69510.html | 2026-08-28 | State Council regulation | effective 2025-01-01 | | R-2 | General Programme manageme - Network accessline 35
| R-1 | revised Regulations on the National Natural Science Fund | https://www.nsfc.gov.cn/p1/2871/2873/69510.html | 2026-08-28 | State Council regulation | effective 2025-01-01 | - Network accessline 36
| R-2 | General Programme management measure | https://www.nsfc.gov.cn/p1/2871/2874/2882/69566.html | 2026-08-28 | official current measure | exact issue/applicability date required | - Network accessline 37
| R-3 | Key Programme management measure | https://www.nsfc.gov.cn/p1/2871/2874/2882/69565.html | 2026-08-28 | official current measure | Key route only | - Network accessline 38
| R-4 | Young C management measure | https://www.nsfc.gov.cn/p1/2871/2874/2882/136725.html | 2026-08-28 | official current measure | issued 2026-06-01 after centralized deadline | - Network accessline 39
| R-5 | project-review expert conduct standard | https://www.nsfc.gov.cn/p1/2871/2874/2884/69612.html | 2026-08-28 | official conduct rule | does not create numeric merit weights | - Network accessline 40
| R-6 | NSFC project funds management measure | https://www.nsfc.gov.cn/p1/2871/2874/2883/69571.html | 2026-08-28 | official finance rule | current programme details still required | - Network accessline 41
| R-7 | 2026 project-funds management opinions | https://www.nsfc.gov.cn/p1/3381/2822/99724.html | 2026-08-28 | official 2026 finance policy | agreement and post-award rules; do not back-project | - Network accessline 45
| ID | Source | URL | Accessed | Authority | Applicability / refresh rule | |---|---|---|---|---|---| | M-1 | Medicine division remit and directions | https://www.nsfc.gov.cn/p1/2858/3211/yxkxbbmjj.html | 2026-08-28 | official current divis - Network accessline 46
|---|---|---|---|---|---| | M-1 | Medicine division remit and directions | https://www.nsfc.gov.cn/p1/2858/3211/yxkxbbmjj.html | 2026-08-28 | official current division page | dynamic scope, not annual codebook | | M-2 | Medicine Division Of - Network accessline 47
| M-1 | Medicine division remit and directions | https://www.nsfc.gov.cn/p1/2858/3211/yxkxbbmjj.html | 2026-08-28 | official current division page | dynamic scope, not annual codebook | - Network accessline 48
| M-2 | Medicine Division Office 5 remit | https://www.nsfc.gov.cn/p1/2858/3212/3226/yxkxwc.html | 2026-08-28 | official current office page | imaging/engineering scope, not final code | - Network accessline 49
| M-3 | 2024 Medicine H-code page | https://www.nsfc.gov.cn/p1/2891/2901/78564.html | 2026-08-28 | official annual code | historical 2024 only | - Network accessline 50
| M-4 | 2025 Medicine H-code page | https://www.nsfc.gov.cn/p1/2931/3391/3416/70031.html | 2026-08-28 | official annual code | historical 2025 only | - Network accessline 51
| M-5 | 2026 Medicine H-code page | https://www.nsfc.gov.cn/p1/2931/3971/4002/99886.html | 2026-08-28 | official annual code | live-recheck before code advice | - Network accessline 52
| M-6 | current Medicine application fields and notes | https://www.nsfc.gov.cn/p1/2931/3971/3975/3991/yxkxb22222.html | 2026-08-28 | official annual division note | exact programme/call required | - Network accessline 53
| M-7 | clinical-programme application advice | https://www.nsfc.gov.cn/p1/2858/3220/3253/sqjy.html | 2026-08-28 | official dynamic advice | no clear issue date; method, not control rule | - Network accessline 54
| M24-1 | 2024 clinical-programme guide | https://www.nsfc.gov.cn/p1/2858/3220/3250/75693.html | 2026-08-28 | official special guide | expired 2024 parameters | - Network accessline 55
| M24-2 | 2024 clinical-programme results | https://www.nsfc.gov.cn/p1/2858/3220/3251/75697.html | 2026-08-28 | official result | clinical programme only | - Network accessline 56
| M25-1 | 2025 clinical-programme guide | https://www.nsfc.gov.cn/p1/2858/3220/3250/96593.html | 2026-08-28 | official special guide | expired 2025 parameters | - Network accessline 57
| M25-2 | 2025 clinical-programme results | https://www.nsfc.gov.cn/p1/2858/3220/3251/96594.html | 2026-08-28 | official result | clinical programme only | - Network accessline 58
| M26-1 | public clinical-programme guide index | https://www.nsfc.gov.cn/p1/2858/3220/3250/zxzn.html | 2026-08-28 | official dynamic index | no 2026 parameter entry as accessed | - Network accessline 59
| M25-3 | AI-enabled acute myocardial-infarction early-warning call | https://www.nsfc.gov.cn/p1/3381/2824/77582.html | 2026-08-28 | official special call | call-specific evidence chain only | - Network accessline 60
| M26-2 | next-generation AI major research plan | https://www.nsfc.gov.cn/p1/3381/2824/100371.html | 2026-08-28 | official special call | plan-specific direction only | - Network accessline 64
| ID | Source | URL | Accessed | Authority | Applicability / refresh rule | |---|---|---|---|---|---| | I-1 | NIH Parent R01 PA-25-301 Sections II/III | https://grants.nih.gov/grants/guide/pa-files/PA-25-301.html | 2026-09-04 | official NOF - Network accessline 65
|---|---|---|---|---|---| | I-1 | NIH Parent R01 PA-25-301 Sections II/III | https://grants.nih.gov/grants/guide/pa-files/PA-25-301.html | 2026-09-04 | official NOFO | Clinical Trial Not Allowed; foreign direct eligibility is separate from - Network accessline 66
| I-1 | NIH Parent R01 PA-25-301 Sections II/III | https://grants.nih.gov/grants/guide/pa-files/PA-25-301.html | 2026-09-04 | official NOFO | Clinical Trial Not Allowed; foreign direct eligibility is separate from prohibited foreign subawar - Network accessline 67
| I-2 | NIH foreign-organization guidance | https://grants.nih.gov/new-to-nih/information-for/foreign-grants | 2026-09-04 | official current guidance | exact NOFO and organization configuration still control | - Network accessline 68
| I-3 | NIH funded international collaboration notice | https://grants.nih.gov/grants/guide/notice-files/NOT-OD-25-155.html | 2026-09-04 | official policy notice | covered international subaward arrangements; not universal R01 domestic-host - Network accessline 69
| I-4 | PF5 PA-26-002 official full announcement | https://files.simpler.grants.gov/opportunities/3df028f3-f97a-4cdf-9359-1c6515d091ce/attachments/32095b88-f093-488f-aa71-1b39ce517067/PA-26-002-Full-Announcement.html | 2026-09-04 | official - Network accessline 70
| I-5 | ERC Synergy scheme | https://erc.europa.eu/apply-grant/synergy-grant | 2026-09-04 | official scheme page | one PI outside EU/associated countries; three evaluation steps | - Network accessline 71
| I-6 | ERC 2026/2027 work-programme changes | https://erc.europa.eu/news-events/news/changes-2026-and-2027-work-programmes | 2026-09-04 | official change notice | 2026 Part II: 7 pages individual schemes, 10 Synergy; exact cycle must be ve - Network accessline 72
| I-7 | NIH clinical-trial definition and decision tool | https://grants.nih.gov/policy-and-compliance/policy-topics/clinical-trials/definition | 2026-09-04 | official current guidance | study/aim-level classification; bind to due date and - Network accessline 73
| I-8 | NIH BESH implementation NOT-OD-26-067 | https://grants.nih.gov/grants/guide/notice-files/NOT-OD-26-067.html | 2026-09-04 | official policy notice | competing application due dates on/after 25 May 2026; prior due dates and award term - Network accessline 77
| ID | Source | URL | Accessed | Source class | Applicability / refresh rule | |---|---|---|---|---|---| | F-1 | CLAIM 2024 update | https://doi.org/10.1148/ryai.240300 | 2026-08-28 | peer-reviewed framework | general medical-imaging AI; no - Network accessline 78
|---|---|---|---|---|---| | F-1 | CLAIM 2024 update | https://doi.org/10.1148/ryai.240300 | 2026-08-28 | peer-reviewed framework | general medical-imaging AI; not radiomics score | | F-2 | STARD-AI | https://doi.org/10.1038/s41591-025-03953 - Network accessline 79
| F-1 | CLAIM 2024 update | https://doi.org/10.1148/ryai.240300 | 2026-08-28 | peer-reviewed framework | general medical-imaging AI; not radiomics score | - Network accessline 80
| F-2 | STARD-AI | https://doi.org/10.1038/s41591-025-03953-8 | 2026-08-28 | peer-reviewed reporting guideline | AI diagnostic accuracy; check corrections | - Network accessline 81
| F-3 | TRIPOD+AI | https://doi.org/10.1136/bmj-2023-078378 | 2026-08-28 | peer-reviewed reporting guideline | prediction models | - Network accessline 82
| F-4 | PROBAST+AI | https://doi.org/10.1136/bmj-2024-082505 | 2026-08-28 | peer-reviewed appraisal tool | prediction-model bias/applicability | - Network accessline 83
| F-5 | FUTURE-AI | https://doi.org/10.1136/bmj-2024-081554 | 2026-08-28 | peer-reviewed consensus guideline | trustworthy/deployable healthcare AI | - Network accessline 84
| F-6 | MI-CLAIM-GEN | https://doi.org/10.1038/s41591-024-03470-0 | 2026-08-28 | peer-reviewed reporting checklist | generative healthcare AI | - Network accessline 85
| F-7 | METRICS | https://pubmed.ncbi.nlm.nih.gov/38228979/ | 2026-08-28 | peer-reviewed radiomics tool | methodology challenge, not fundability score | - Network accessline 86
| F-8 | IBSI standardized filters | https://doi.org/10.1148/radiol.231319 | 2026-08-28 | peer-reviewed standardization work | radiomic filters/features | - Network accessline 87
| F-9 | RQS 2.0 | https://doi.org/10.1038/s41571-025-01067-1 | 2026-08-28 | peer-reviewed framework | radiomics readiness/translation, not validity proof | - Network accessline 88
| F-10 | DECIDE-AI | https://doi.org/10.1038/s41591-022-01772-9 | 2026-08-28 | peer-reviewed reporting guideline | early live clinical AI evaluation | - Network accessline 89
| F-11 | quantitative-imaging biomarker metrology | https://doi.org/10.1148/radiol.2015142202 | 2026-08-28 | peer-reviewed metrology framework | quantitative imaging claims | - Network accessline 90
| F-12 | DICOM current standard | https://www.dicomstandard.org/current/ | 2026-08-28 | normative technical standard | current edition at use | - Network accessline 91
| F-13 | QIBA Profiles | https://qibawiki.rsna.org/index.php/Profiles | 2026-08-28 | consensus metrology profiles | select modality/claim-specific profile | - Network accessline 95
| ID | Source | URL | Accessed | Authority | Applicability / refresh rule | |---|---|---|---|---|---| | E-1 | human genetic-resources implementation rule | https://www.most.gov.cn/xxgk/xinxifenlei/fdzdgknr/fgzc/bmgz/202306/t20230601_186416. - Network accessline 96
|---|---|---|---|---|---| | E-1 | human genetic-resources implementation rule | https://www.most.gov.cn/xxgk/xinxifenlei/fdzdgknr/fgzc/bmgz/202306/t20230601_186416.html | 2026-08-28 | current department rule | pure imaging exclusion does no - Network accessline 97
| E-1 | human genetic-resources implementation rule | https://www.most.gov.cn/xxgk/xinxifenlei/fdzdgknr/fgzc/bmgz/202306/t20230601_186416.html | 2026-08-28 | current department rule | pure imaging exclusion does not remove privacy/ethics du - Network accessline 98
| E-2 | 2026 HGR revision consultation draft | https://www.nhc.gov.cn/qjjys/c100015/202605/9b38dffa8d8047ea94813f40aca8d282.shtml | 2026-08-28 | draft | `DRAFT_NONCONTROLLING` | - Network accessline 99
| E-3 | Personal Information Protection Law | https://www.miit.gov.cn/jgsj/zfs/fl/art/2022/art_515a4b20c12f430eab54bb4f56d89f56.html | 2026-08-28 | law | health data remain sensitive personal information |
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'https://doi.org/10.1136/bmj-2024-082505', - Network accessline 138
'https://doi.org/10.1136/bmj-2024-081554', - Network accessline 139
'https://doi.org/10.1038/s41591-024-03470-0', - Network accessline 140
'https://pubmed.ncbi.nlm.nih.gov/38228979/', - Network accessline 141
'https://doi.org/10.1148/radiol.231319', - Network accessline 142
'https://doi.org/10.1038/s41571-025-01067-1', - Network accessline 143
'https://doi.org/10.1038/s41591-022-01772-9', - Network accessline 144
'https://doi.org/10.1148/radiol.2015142202', - Network accessline 145
'https://www.dicomstandard.org/current/', - Network accessline 146
'https://qibawiki.rsna.org/index.php/Profiles'
radiology-skills/skills/radiology-health-economics/references/source-registry.md
- Network accessline 7
| Claim-use | URL | Version / status on access | Accessed | |---|---|---|---| | reporting a comparative health economic evaluation | https://www.ispor.org/heor-resources/good-practices/cheers | official ISPOR CHEERS hub; CHEERS 2022 replace - Network accessline 8
|---|---|---|---| | reporting a comparative health economic evaluation | https://www.ispor.org/heor-resources/good-practices/cheers | official ISPOR CHEERS hub; CHEERS 2022 replaces 2013 and contains 28 reporting items; reporting guidance, - Network accessline 9
| reporting a comparative health economic evaluation | https://www.ispor.org/heor-resources/good-practices/cheers | official ISPOR CHEERS hub; CHEERS 2022 replaces 2013 and contains 28 reporting items; reporting guidance, not methodological - Network accessline 10
| AI-specific extensions to economic-evaluation reporting | https://doi.org/10.1016/j.jval.2024.05.006 | primary CHEERS-AI 2024 statement; apply in addition to CHEERS 2022 when the intervention uses AI, subject to target requirements | 2026 - Network accessline 11
| current England technology-appraisal reference case, incremental analysis and diagnostic-outcome bridge | https://www.nice.org.uk/process/pmg36/chapter/economic-evaluation-2/ | official NICE PMG36 economic-evaluation chapter, published 20 - Network accessline 12
| current NICE HealthTech programme route and process boundary | https://www.nice.org.uk/process/pmg48/chapter/introduction | official PMG48, published 2025-07-14 and shown updated 2025-12-17; route-specific, not a universal HTA method | 20 - Network accessline 13
| multidisciplinary HTA of medical devices, including economic, ethical and social dimensions | https://www.who.int/publications/i/item/9789240110878 | WHO medical devices technical series, second edition, 2025 publication page; capacity/go - Network accessline 14
| conceptual model selection and fit to decision problem | https://www.ispor.org/docs/default-source/resources/outcomes-research-guidelines-index/conceptualizing_a_model-2.pdf | ISPOR-SMDM Modeling Good Research Practices Task Force report - Network accessline 15
| cohort Markov and individual state-transition model structure/use | https://www.ispor.org/docs/default-source/resources/outcomes-research-guidelines-index/state-transition_modeling-3.pdf | ISPOR-SMDM Task Force report 3, 2012; use when ti - Network accessline 16
| payer-specific budget impact population, uptake, costs and scenarios | https://doi.org/10.1016/j.jval.2013.08.2291 | ISPOR Budget Impact Analysis Good Practice II report, 2014; does not supersede local BIA rules | 2026-08-23 | - Network accessline 17
| VOI concepts and use for adoption/research decisions | https://www.ispor.org/publications/journals/value-in-health/abstract/Volume-23--Issue-2/Value-of-Information-Analysis-for-Research-Decisions-An-Introduction-Report-1-of-the-ISPOR-Valu - Network accessline 18
| decision-curve net benefit definition and boundary from economic evaluation | https://pubmed.ncbi.nlm.nih.gov/17099194/ | primary 2006 decision-curve-analysis article, DOI 10.1177/0272989X06295361; clinical net benefit is not monetary net
radiology-skills/skills/radiology-health-economics/scripts/validate_health_economics_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 98
$sourceUrls = @( 'https://www.ispor.org/heor-resources/good-practices/cheers', - Network accessline 99
'https://www.ispor.org/heor-resources/good-practices/cheers', - Network accessline 100
'https://doi.org/10.1016/j.jval.2024.05.006', - Network accessline 101
'https://www.nice.org.uk/process/pmg36/chapter/economic-evaluation-2/', - Network accessline 102
'https://www.nice.org.uk/process/pmg48/chapter/introduction', - Network accessline 103
'https://www.who.int/publications/i/item/9789240110878', - Network accessline 104
'https://www.ispor.org/docs/default-source/resources/outcomes-research-guidelines-index/conceptualizing_a_model-2.pdf', - Network accessline 105
'https://www.ispor.org/docs/default-source/resources/outcomes-research-guidelines-index/state-transition_modeling-3.pdf', - Network accessline 106
'https://doi.org/10.1016/j.jval.2013.08.2291', - Network accessline 107
'https://www.ispor.org/publications/journals/value-in-health/abstract/Volume-23--Issue-2/Value-of-Information-Analysis-for-Research-Decisions-An-Introduction-Report-1-of-the-ISPOR-Value-of-Information-Analysis-Emerging-Good-Practices-Task-F - Network accessline 108
'https://pubmed.ncbi.nlm.nih.gov/17099194/'
radiology-skills/skills/radiology-innovation-transfer/references/source-registry.md
- Network accessline 7
| Source | Version/status at access | Claim-use | Verification state | Accessed | |---|---|---|---|---| | [WIPO Guidelines for Preparing Patent Landscape Reports](https://www.wipo.int/publications/en/details.jsp?id=3938) | WIPO publication, - Network accessline 8
|---|---|---|---|---| | [WIPO Guidelines for Preparing Patent Landscape Reports](https://www.wipo.int/publications/en/details.jsp?id=3938) | WIPO publication, 2015 | Reproducible landscape objectives, search/analytics workflow and report ty - Network accessline 9
| [WIPO Guidelines for Preparing Patent Landscape Reports](https://www.wipo.int/publications/en/details.jsp?id=3938) | WIPO publication, 2015 | Reproducible landscape objectives, search/analytics workflow and report types | Stable method; c - Network accessline 10
| [WIPO Patent Analytics](https://www.wipo.int/en/web/patent-analytics) | Living WIPO resource hub | Patent analytics methods and tools | Verify current resources | 2026-08-23 | - Network accessline 11
| [WIPO PATENTSCOPE](https://patentscope.wipo.int/search/en/search.jsf) | Dynamic international patent database | Patent/PCT retrieval source | `LIVE_VERIFICATION_REQUIRED` for coverage/status/query | 2026-08-23 | - Network accessline 12
| [USPTO Applying for Patents](https://www.uspto.gov/patents/basics/apply) | Living USPTO guidance | Preliminary prior-art search is incomplete; patent practitioner handoff | `LIVE_VERIFICATION_REQUIRED` for U.S. rules | 2026-08-23 | - Network accessline 13
| [USPTO Patent Public Search](https://ppubs.uspto.gov/pubwebapp/static/pages/landing.html) | Dynamic U.S. patent search service | U.S. patent/application retrieval | `LIVE_VERIFICATION_REQUIRED` | 2026-08-23 | - Network accessline 14
| [WIPO Patent FAQs](https://www.wipo.int/en/web/patents/faq_patents) | Living WIPO guidance | Public disclosure/confidentiality risks and jurisdiction dependence | `LIVE_VERIFICATION_REQUIRED`; obtain counsel | 2026-08-23 | - Network accessline 15
| [WIPO Trade Secrets](https://www.wipo.int/en/web/trade-secrets/) | Living WIPO guidance | Reasonable secrecy measures, NDAs and trade-secret limits | `LIVE_VERIFICATION_REQUIRED`; not legal advice | 2026-08-23 | - Network accessline 16
| [NASA Technology Readiness Levels](https://www.nasa.gov/directorates/somd/space-communications-navigation-program/technology-readiness-levels/) | NASA TRL overview, page updated 2026 at access | TRL concepts and evidence progression | Sta - Network accessline 17
| [DoD Manufacturing Readiness policy/resources](https://www.cto.mil/sea/pg/) | Living DoD policy/resource index | Official route to Manufacturing Readiness Levels Deskbook | Verify current linked deskbook/version | 2026-08-23 | - Network accessline 18
| [DoD Manufacturing Readiness Level Working Group](https://www.dodmantech.mil/JDMTP/Subpanels-Technical-Working-Groups-TWG/Manufacturing-Readiness-Level-Working-Group/) | Living DoD working-group page | Corroborating route to MRL stewardsh - Network accessline 19
| [AUTM Technology Transfer Practice Manual, Volume 3](https://autm.net/surveys-and-tools/tech-transfer-practices-manual/volume-3) | Living professional manual access page | Disclosure/review/protection process context | Respect access/copy - Network accessline 20
| [FDA Medical Device Software Guidance Navigator](https://www.fda.gov/medical-devices/regulatory-accelerator/medical-device-software-guidance-navigator) | Dynamic FDA navigator | Qualified regulatory handoff for SaMD/AI, cybersecurity and - Network accessline 21
| [IMDRF SaMD Clinical Evaluation N41](https://www.imdrf.org/documents/software-medical-device-samd-clinical-evaluation) | Final IMDRF technical document, 2017 | Valid clinical association, analytical validation and clinical validation dist - Network accessline 22
| [DICOM current standard](https://www.dicomstandard.org/current/) | Living standard index | Imaging interoperability/de-identification dependency discovery | `LIVE_VERIFICATION_REQUIRED`; conformance does not prove local interoperability |
radiology-skills/skills/radiology-innovation-transfer/scripts/validate_innovation_transfer_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 38
} foreach ($url in @( 'https://www.wipo.int/publications/en/details.jsp?id=3938', - Network accessline 39
foreach ($url in @( 'https://www.wipo.int/publications/en/details.jsp?id=3938', 'https://www.wipo.int/en/web/patent-analytics', - Network accessline 40
'https://www.wipo.int/publications/en/details.jsp?id=3938', - Network accessline 41
'https://www.wipo.int/en/web/patent-analytics', - Network accessline 42
'https://patentscope.wipo.int/search/en/search.jsf', - Network accessline 43
'https://www.uspto.gov/patents/basics/apply', - Network accessline 44
'https://ppubs.uspto.gov/pubwebapp/static/pages/landing.html', - Network accessline 45
'https://www.wipo.int/en/web/patents/faq_patents', - Network accessline 46
'https://www.wipo.int/en/web/trade-secrets/', - Network accessline 47
'https://www.nasa.gov/directorates/somd/space-communications-navigation-program/technology-readiness-levels/', - Network accessline 48
'https://www.cto.mil/sea/pg/', - Network accessline 49
'https://www.dodmantech.mil/JDMTP/Subpanels-Technical-Working-Groups-TWG/Manufacturing-Readiness-Level-Working-Group/', - Network accessline 50
'https://autm.net/surveys-and-tools/tech-transfer-practices-manual/volume-3', - Network accessline 51
'https://www.fda.gov/medical-devices/regulatory-accelerator/medical-device-software-guidance-navigator', - Network accessline 52
'https://www.imdrf.org/documents/software-medical-device-samd-clinical-evaluation'
radiology-skills/skills/radiology-method-evaluation/scripts/validate_method_evaluation_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-paper2ppt/references/claim-evidence-and-narrative.md
- Network accessline 228
2013;29(6):1564-1579. Controlled presentation content while comparing slide structures; supports message headlines and relevant visual evidence, with context-specific limits. https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf - Network accessline 229
message headlines and relevant visual evidence, with context-specific limits. https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf - Naegle KM. *Ten simple rules for effective presentation slides*. PLOS Computational Biology. - Network accessline 230
https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf - Network accessline 231
- Naegle KM. *Ten simple rules for effective presentation slides*. PLOS Computational Biology. 2021;17:e1009554. Supports one idea per slide, conclusion-bearing titles, splitting manuscript multipanels, and rehearsal-informed scope. htt - Network accessline 232
2021;17:e1009554. Supports one idea per slide, conclusion-bearing titles, splitting manuscript multipanels, and rehearsal-informed scope. https://doi.org/10.1371/journal.pcbi.1009554 - Bourne PE. *Ten Simple Rules for Making Good Oral Pre - Network accessline 233
multipanels, and rehearsal-informed scope. https://doi.org/10.1371/journal.pcbi.1009554 - Network accessline 234
- Bourne PE. *Ten Simple Rules for Making Good Oral Presentations*. PLOS Computational Biology. 2007;3:e77. Supports audience-first scope, prioritization, rehearsal, and delivery bounded by the allotted time. https://doi.org/10.1371/jou - Network accessline 235
2007;3:e77. Supports audience-first scope, prioritization, rehearsal, and delivery bounded by the allotted time. https://doi.org/10.1371/journal.pcbi.0030077 - NIH Office of Dietary Supplements. *Scientifically Speaking: How to Prepare an - Network accessline 236
allotted time. https://doi.org/10.1371/journal.pcbi.0030077 - Network accessline 237
- NIH Office of Dietary Supplements. *Scientifically Speaking: How to Prepare an Effective Talk*. Supports common ground, main question, anchor result, image interpretation, take-home synthesis, and finishing on time. https://ods.od.nih - Network accessline 239
and finishing on time. https://ods.od.nih.gov/News/Scientifically_Speaking_How_to_Prepare_an_Effective_Talk.aspx
radiology-skills/skills/radiology-paper2ppt/references/deck-quality-qa.md
- Network accessline 224
Official operational checks for Accessibility Checker, alt text, unique titles, logical reading order, contrast, non-color cues, tables, and media. https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-presen - Network accessline 225
order, contrast, non-color cues, tables, and media. https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-presentations-accessible-to-people-with-disabilities - ACR, RSNA, and SIIM. *Protecting Patient Informat - Network accessline 226
https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-presentations-accessible-to-people-with-disabilities - Network accessline 227
- ACR, RSNA, and SIIM. *Protecting Patient Information in Online Medical Presentations*. Establishes that presentation-software crops/black bars are not permanent de-identification and recommends safe source capture plus final sanitizat - Network accessline 228
that presentation-software crops/black bars are not permanent de-identification and recommends safe source capture plus final sanitization. https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf - RSNA. *Faculty and presen - Network accessline 229
safe source capture plus final sanitization. https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf - Network accessline 230
- RSNA. *Faculty and presenter resources*. Organizer-specific templates, upload, and scientific presentation requirements must be checked for the applicable year/type. https://www.rsna.org/annual-meeting/attendee-resources/faculty-and-p - Network accessline 231
presentation requirements must be checked for the applicable year/type. https://www.rsna.org/annual-meeting/attendee-resources/faculty-and-presenter-resources - Naegle KM. *Ten simple rules for effective presentation slides*. Supports one - Network accessline 232
https://www.rsna.org/annual-meeting/attendee-resources/faculty-and-presenter-resources - Network accessline 233
- Naegle KM. *Ten simple rules for effective presentation slides*. Supports one idea/slide, conclusion-oriented titles, graphics, and rehearsal-linked scope. https://doi.org/10.1371/journal.pcbi.1009554 - Network accessline 235
https://doi.org/10.1371/journal.pcbi.1009554
radiology-skills/skills/radiology-paper2ppt/references/scientific-deck-routing.md
- Network accessline 237
2013;29(6):1564-1579. The experiment supports sentence-message headlines and relevant visual evidence over common topic/bullet defaults; it does not prove one structure is optimal for every audience or deck job. https://www.ijee.ie/arti - Network accessline 238
evidence over common topic/bullet defaults; it does not prove one structure is optimal for every audience or deck job. https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf - NIH Office of Dietary Supplements. *Scientifically Speaking: H - Network accessline 239
audience or deck job. https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf - Network accessline 241
Supports audience common ground, a main question, an anchor result, synthesis, and time-aware supporting material. Its “two minutes per slide” is an average example, not a universal quota. https://ods.od.nih.gov/News/Scientifically_Spea - Network accessline 242
supporting material. Its “two minutes per slide” is an average example, not a universal quota. https://ods.od.nih.gov/News/Scientifically_Speaking_How_to_Prepare_an_Effective_Talk.aspx - Naegle KM. *Ten simple rules for effective presenta - Network accessline 243
https://ods.od.nih.gov/News/Scientifically_Speaking_How_to_Prepare_an_Effective_Talk.aspx - Network accessline 244
- Naegle KM. *Ten simple rules for effective presentation slides*. PLOS Computational Biology. 2021;17:e1009554. Supports one main idea per slide, conclusion-oriented titles, meaningful figures, and rehearsal-linked slide scope. https:/ - Network accessline 245
2021;17:e1009554. Supports one main idea per slide, conclusion-oriented titles, meaningful figures, and rehearsal-linked slide scope. https://doi.org/10.1371/journal.pcbi.1009554 - NIH. *Simplified Peer Review Framework*. Current official - Network accessline 246
and rehearsal-linked slide scope. https://doi.org/10.1371/journal.pcbi.1009554 - Network accessline 247
- NIH. *Simplified Peer Review Framework*. Current official example of sponsor-specific grant review factors for many NIH research project grants due on or after 25 January 2025; applicability must be checked against the exact opportuni - Network accessline 248
factors for many NIH research project grants due on or after 25 January 2025; applicability must be checked against the exact opportunity and date. https://www.grants.nih.gov/policy-and-compliance/policy-topics/peer-review/simplifying-rev - Network accessline 249
checked against the exact opportunity and date. https://www.grants.nih.gov/policy-and-compliance/policy-topics/peer-review/simplifying-review/framework - Network accessline 251
type; organizer templates and upload rules override generic defaults. https://www.rsna.org/annual-meeting/attendee-resources/faculty-and-presenter-resources
radiology-skills/skills/radiology-paper2ppt/references/visual-evidence-and-radiology-images.md
- Network accessline 257
- DICOM PS3.14, current, *Grayscale Standard Display Function*. Establishes the perceptual grayscale display function and ambient-light context; it does not certify a general presentation projector as diagnostic. https://dicom.nema.org/ - Network accessline 258
display function and ambient-light context; it does not certify a general presentation projector as diagnostic. https://dicom.nema.org/medical/dicom/current/output/chtml/part14/chapter_7.html - DICOM PS3.15, current, *Attribute Confidenti - Network accessline 259
diagnostic. https://dicom.nema.org/medical/dicom/current/output/chtml/part14/chapter_7.html - Network accessline 260
- DICOM PS3.15, current, *Attribute Confidentiality Profiles*. Establishes the de-identification profile, the responsibility to remove identifying information, and special handling of burned-in pixel information and overlays. https://di - Network accessline 261
profile, the responsibility to remove identifying information, and special handling of burned-in pixel information and overlays. https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html - ACR, RSNA, and SIIM. *Prote - Network accessline 262
pixel information and overlays. https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html - Network accessline 264
joint guidance that in-application crops and black bars do not permanently remove PHI; source images should be safely captured or permanently cleaned before insertion, and the final package should be sanitized before public use. https:/ - Network accessline 265
images should be safely captured or permanently cleaned before insertion, and the final package should be sanitized before public use. https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf - ACR-AAPM-SIIM. *Technical Stan - Network accessline 266
should be sanitized before public use. https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf - Network accessline 268
importance of luminance response, ambient lighting, and display-purpose distinctions. Apply the current standard and local qualified-physicist/institutional requirements when diagnostic display performance is in scope. https://cs.acr.or - Network accessline 269
current standard and local qualified-physicist/institutional requirements when diagnostic display performance is in scope. https://cs.acr.org/-/media/ACR/Files/Practice-Parameters/Elec-Practice-MedImag.pdf - Weissgerber TL, et al. *Beyond - Network accessline 270
performance is in scope. https://cs.acr.org/-/media/ACR/Files/Practice-Parameters/Elec-Practice-MedImag.pdf - Network accessline 272
PLOS Biology. 2015;13:e1002128. Supports displaying distributions/individual observations and preserving paired structure rather than relying only on summary bars for continuous data. https://doi.org/10.1371/journal.pbio.1002128 - Network accessline 273
preserving paired structure rather than relying only on summary bars for continuous data. https://doi.org/10.1371/journal.pbio.1002128 - Naegle KM. *Ten simple rules for effective presentation slides*. Supports splitting manuscript - Network accessline 274
https://doi.org/10.1371/journal.pbio.1002128 - Network accessline 275
- Naegle KM. *Ten simple rules for effective presentation slides*. Supports splitting manuscript multipanels and explicitly introducing visual evidence. https://doi.org/10.1371/journal.pcbi.1009554 - Microsoft Support. *Make your PowerPoi - Network accessline 276
multipanels and explicitly introducing visual evidence. https://doi.org/10.1371/journal.pcbi.1009554 - Network accessline 278
Official guidance for alt text, unique titles, logical reading order, contrast, non-color cues, accessible tables/media, and the Accessibility Checker. https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-pr - Network accessline 279
accessible tables/media, and the Accessibility Checker. https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-presentations-accessible-to-people-with-disabilities - Creative Commons. *Recommended practices for - Network accessline 280
https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-presentations-accessible-to-people-with-disabilities - Network accessline 281
- Creative Commons. *Recommended practices for attribution*. Supports retaining Title, Author, Source, License and indicating adaptations for CC material. https://wiki.creativecommons.org/wiki/Best_practices_for_attribution - U.S. Copyrig - Network accessline 282
Source, License and indicating adaptations for CC material. https://wiki.creativecommons.org/wiki/Best_practices_for_attribution - Network accessline 283
- U.S. Copyright Office. *How to Obtain Permission*. Supports treating license/permission as distinct from attribution and checking the intended use; local law and institutional policy may differ. https://www.copyright.gov/circs/m10.pdf - Network accessline 285
https://www.copyright.gov/circs/m10.pdf
radiology-skills/skills/radiology-paper2ppt/scripts/validate_scientific_presentation_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 122
$sourceUrls = @( 'https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf', - Network accessline 123
'https://www.ijee.ie/articles/Vol29-6/23_ijee2791ns.pdf', - Network accessline 124
'https://doi.org/10.1371/journal.pcbi.1009554', - Network accessline 125
'https://doi.org/10.1371/journal.pcbi.0030077', - Network accessline 126
'https://ods.od.nih.gov/News/Scientifically_Speaking_How_to_Prepare_an_Effective_Talk.aspx', - Network accessline 127
'https://www.grants.nih.gov/policy-and-compliance/policy-topics/peer-review/simplifying-review/framework', - Network accessline 128
'https://www.rsna.org/annual-meeting/attendee-resources/faculty-and-presenter-resources', - Network accessline 129
'https://doi.org/10.1371/journal.pbio.1002128', - Network accessline 130
'https://dicom.nema.org/medical/dicom/current/output/chtml/part14/chapter_7.html', - Network accessline 131
'https://dicom.nema.org/medical/dicom/current/output/chtml/part15/chapter_E.html', - Network accessline 132
'https://www.rsna.org/-/media/Files/RSNA/Practice-Tools/RemovingPHI.pdf', - Network accessline 133
'https://support.microsoft.com/en-us/accessibility/powerpoint/make-your-powerpoint-presentations-accessible-to-people-with-disabilities', - Network accessline 134
'https://wiki.creativecommons.org/wiki/Best_practices_for_attribution'
radiology-skills/skills/radiology-pipeline/references/action-authorization-and-execution-trace.md
- Network accessline 142
The [OpenAI Agents SDK guardrails](https://github.com/openai/openai-agents-python/blob/main/docs/guardrails.md), - Network accessline 143
[human-in-the-loop](https://github.com/openai/openai-agents-python/blob/main/docs/human_in_the_loop.md) - Network accessline 144
and [tracing](https://github.com/openai/openai-agents-python/blob/main/docs/tracing.md) documentation
radiology-skills/skills/radiology-pipeline/references/equity-stakeholder-and-participation-gate.md
- Network accessline 57
- World Medical Association. [Declaration of Helsinki, 2024](https://www.wma.net/policies-post/wma-declaration-of-helsinki/). - Network accessline 58
- SPIRIT–CONSORT. [Patient and public involvement item](https://www.consort-spirit.org/item11-patient-publicinvolvement). - Network accessline 59
- EQUATOR. [GRIPP2](https://www.equator-network.org/reporting-guidelines/gripp2-reporting-checklists-tools-to-improve-reporting-of-patient-and-public-involvement-in-research/). - Network accessline 60
- FDA. [Good Machine Learning Practice guiding principles](https://www.fda.gov/medical-devices/software-medical-device-samd/good-machine-learning-practice-medical-device-development-guiding-principles).
radiology-skills/skills/radiology-pipeline/references/experiment-lineage-dag.md
radiology-skills/skills/radiology-pipeline/references/open-science-and-reproducibility-gate.md
- Network accessline 101
- Wilkinson MD, et al. [FAIR Guiding Principles](https://doi.org/10.1038/sdata.2016.18). - Network accessline 102
- Nosek BA, et al. [Transparency and Openness Promotion guidelines](https://doi.org/10.1126/science.aab2374). - Network accessline 103
- Collins GS, et al. [TRIPOD+AI](https://doi.org/10.1136/bmj-2023-078378). - Network accessline 104
- Tejani AS, et al. [CLAIM 2024 Update](https://doi.org/10.1148/ryai.240300). - Network accessline 105
- National Academies. [Reproducibility and Replicability in Science](https://doi.org/10.17226/25303). - Network accessline 106
- Chue Hong NP, et al. [FAIR Principles for Research Software](https://doi.org/10.15497/RDA00068). - Network accessline 107
- W3C. [PROV-O: The PROV Ontology](https://www.w3.org/TR/prov-o/).
radiology-skills/skills/radiology-pipeline/references/post-publication-and-staleness-lifecycle.md
- Network accessline 66
- ICMJE. [Corrections and Version Control](https://www.icmje.org/recommendations/browse/publishing-and-editorial-issues/corrections-and-version-control.html), - Network accessline 67
official recommendations accessed 2026-08-23. - Crossref. [Crossmark](https://www.crossref.org/documentation/crossmark/), status/update metadata documentation accessed 2026-08-23. - Network accessline 68
- Crossref. [Crossmark](https://www.crossref.org/documentation/crossmark/), status/update metadata - Network accessline 69
documentation accessed 2026-08-23. - NIH. [Public Access](https://grants.nih.gov/policy-and-compliance/policy-topics/public-access), current official overview accessed 2026-08-23. - Network accessline 70
- NIH. [Public Access](https://grants.nih.gov/policy-and-compliance/policy-topics/public-access), - Network accessline 71
current official overview accessed 2026-08-23. - EQUATOR. [PRISMA-LSR record](https://www.equator-network.org/reporting-guidelines/prisma-lsr-extension/) (verify current source/version at each update). - Network accessline 72
- EQUATOR. [PRISMA-LSR record](https://www.equator-network.org/reporting-guidelines/prisma-lsr-extension/)
radiology-skills/skills/radiology-pipeline/references/progressive-disclosure-and-resource-reachability.md
- Network accessline 33
- [Agent Skills specification](https://github.com/agentskills/agentskills/blob/main/docs/specification.mdx) - Network accessline 34
defines metadata -> `SKILL.md` -> on-demand resources as progressive disclosure and recommends shallow file references. - [Anthropic skill-creator](https://github.com/anthropics/skills/blob/main/skills/skill-creator/SKILL.md) - Network accessline 35
shallow file references. - [Anthropic skill-creator](https://github.com/anthropics/skills/blob/main/skills/skill-creator/SKILL.md) likewise separates entry instructions from conditionally loaded resources and emphasizes - Network accessline 36
- [Anthropic skill-creator](https://github.com/anthropics/skills/blob/main/skills/skill-creator/SKILL.md)
radiology-skills/skills/radiology-pipeline/references/responsible-research-governance-routing.md
- Network accessline 46
- ICMJE. [Defining the Role of Authors and Contributors](https://www.icmje.org/recommendations/browse/roles-and-responsibilities/defining-the-role-of-authors-and-contributors.html). - Network accessline 47
- NISO. [CRediT taxonomy](https://credit.niso.org/). - Network accessline 48
- ICMJE. [Use of Artificial Intelligence in Publishing](https://www.icmje.org/recommendations/browse/artificial-intelligence/). - Network accessline 49
- National Academies. [The Science of Team Science, 2025 interactive report](https://nap.nationalacademies.org/resource/29043/interactive/). - Network accessline 50
- HHS ORI. [Guidance documents](https://ori.hhs.gov/guidance-documents).
radiology-skills/skills/radiology-pipeline/scripts/action_authorization_trace_test.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/capability_maturity_catalog_test.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/compute_analysis_lock_digest.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/compute_project_state_digests.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/init_research_project.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/test_experiment_lineage.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/test_research_project.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/validate_action_authorization_trace.py
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#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/validate_adversarial_behavior_cases.ps1
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Executable file
radiology-skills/skills/radiology-pipeline/scripts/validate_capability_maturity_catalog.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/validate_experiment_lineage.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/validate_global_research_routes.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-pipeline/scripts/validate_research_project.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-pipeline/scripts/validate_standalone_release.ps1
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Executable file
radiology-skills/skills/radiology-prereview/references/review-modes-and-editorial-governance.md
- Network accessline 64
- ICMJE. [Responsibilities in the Submission and Peer-Review Process](https://www.icmje.org/recommendations/browse/roles-and-responsibilities/responsibilities-in-the-submission-and-peer-peview-process.html) - Network accessline 65
(official recommendations accessed 2026-08-23). - ICMJE. [Use of Artificial Intelligence in Publishing](https://www.icmje.org/recommendations/browse/artificial-intelligence/) (official recommendations accessed 2026-08-23). - Network accessline 66
- ICMJE. [Use of Artificial Intelligence in Publishing](https://www.icmje.org/recommendations/browse/artificial-intelligence/) - Network accessline 67
(official recommendations accessed 2026-08-23). - COPE. [Ethical Guidelines for Peer Reviewers](https://publicationethics.org/resources/guidelines/cope-ethical-guidelines-peer-reviewers) (verify current journal adoption and version before - Network accessline 68
- COPE. [Ethical Guidelines for Peer Reviewers](https://publicationethics.org/resources/guidelines/cope-ethical-guidelines-peer-reviewers)
radiology-skills/skills/radiology-prereview/scripts/test_prereview_governance_gates.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-prereview/scripts/test_scientific_prereview_receipt.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-prereview/scripts/validate_prereview_governance_gates.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-prereview/scripts/validate_scientific_prereview_receipt.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-qualitative-mixed-methods/references/mixed-methods-integration.md
- Network accessline 92
[Fetters, Curry and Creswell (2013)](https://pmc.ncbi.nlm.nih.gov/articles/PMC4097839/)
radiology-skills/skills/radiology-qualitative-mixed-methods/references/source-registry.md
- Network accessline 6
| Claim-use | URL | Version / status on access | Accessed | |---|---|---|---| | health-sciences mixed-methods rationale, core designs and integration planning | https://obssr.od.nih.gov/sites/g/files/mnhszr296/files/Best_Practices_for_Mixed - Network accessline 7
|---|---|---|---| | health-sciences mixed-methods rationale, core designs and integration planning | https://obssr.od.nih.gov/sites/g/files/mnhszr296/files/Best_Practices_for_Mixed_Methods_Research.pdf | official NIH OBSSR 2011 methodologic - Network accessline 8
| health-sciences mixed-methods rationale, core designs and integration planning | https://obssr.od.nih.gov/sites/g/files/mnhszr296/files/Best_Practices_for_Mixed_Methods_Research.pdf | official NIH OBSSR 2011 methodological guide; merging, - Network accessline 9
| integration level and format; sampling connection, building, merging, embedding and integrated narrative | https://pmc.ncbi.nlm.nih.gov/articles/PMC4097839/ | primary 2013 methods article; integration at design, methods and interpretation - Network accessline 10
| broad qualitative reporting transparency | https://www.equator-network.org/reporting-guidelines/srqr/ | EQUATOR record for SRQR, primary guideline 2014, 21 items; reporting guidance rather than design-quality certification | 2026-08-23 | - Network accessline 11
| interview and focus-group reporting transparency | https://www.equator-network.org/reporting-guidelines/coreq/ | EQUATOR record for COREQ, primary guideline 2007, 32 items; do not extend automatically to observation or all qualitative des - Network accessline 12
| qualitative and mixed-methods reporting fields, including researcher perspective and integration | https://www.apa.org/pubs/journals/resources/apa-style-jars | official APA JARS hub, qualitative and mixed-methods standards introduced in 2 - Network accessline 13
| information-power dimensions and iterative sample-adequacy reasoning for interview studies | https://doi.org/10.1177/1049732315617444 | primary 2016 methodological article; approximate, study-specific guide rather than a fixed sample-size - Network accessline 14
| framework-method stages and multidisciplinary health-research use | https://doi.org/10.1186/1471-2288-13-117 | primary open-access 2013 methods article; suitable use still depends on question and analytic orientation | 2026-08-23 | - Network accessline 15
| reflexive thematic-analysis quality and incompatibility of one-size-fits-all rigor markers | https://doi.org/10.1080/14780887.2020.1769238 | primary 2021 methodological article; supports method-congruent evaluation, not a single mandatory - Network accessline 16
| joint displays as planning, analytic and presentation tools across convergent and sequential designs | https://doi.org/10.1177/16094069221104564 | primary 2022 methodological article; a display must enact integration rather than merely ju - Network accessline 17
| integrated joint displays and meta-inference in health-sciences mixed methods | https://pmc.ncbi.nlm.nih.gov/articles/PMC4639381/ | primary methodological review/article with full text; use for integration patterns, not causal certificati
radiology-skills/skills/radiology-qualitative-mixed-methods/scripts/validate_qualitative_mixed_methods_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 92
$sourceUrls = @( 'https://pmc.ncbi.nlm.nih.gov/articles/PMC4097839/', - Network accessline 93
'https://pmc.ncbi.nlm.nih.gov/articles/PMC4097839/', - Network accessline 94
'https://obssr.od.nih.gov/sites/g/files/mnhszr296/files/Best_Practices_for_Mixed_Methods_Research.pdf', - Network accessline 95
'https://www.equator-network.org/reporting-guidelines/srqr/', - Network accessline 96
'https://www.equator-network.org/reporting-guidelines/coreq/', - Network accessline 97
'https://www.apa.org/pubs/journals/resources/apa-style-jars', - Network accessline 98
'https://doi.org/10.1177/1049732315617444', - Network accessline 99
'https://doi.org/10.1186/1471-2288-13-117', - Network accessline 100
'https://doi.org/10.1080/14780887.2020.1769238', - Network accessline 101
'https://doi.org/10.1177/16094069221104564', - Network accessline 102
'https://pmc.ncbi.nlm.nih.gov/articles/PMC4639381/'
radiology-skills/skills/radiology-radiogenomics/references/architecture-provenance.md
- Network accessline 27
| Source | Inspected distribution | Snapshot | Patterns adapted | |---|---|---|---| | [Academic Research Skills](https://github.com/Imbad0202/academic-research-skills) and [ARS-Codex](https://github.com/Imbad0202/academic-research-skills-co - Network accessline 28
|---|---|---|---| | [Academic Research Skills](https://github.com/Imbad0202/academic-research-skills) and [ARS-Codex](https://github.com/Imbad0202/academic-research-skills-codex) | ARS-Codex 0.1.26, vendoring ARS suite 3.21.0 | Codex reposi - Network accessline 29
| [Academic Research Skills](https://github.com/Imbad0202/academic-research-skills) and [ARS-Codex](https://github.com/Imbad0202/academic-research-skills-codex) | ARS-Codex 0.1.26, vendoring ARS suite 3.21.0 | Codex repository `main` commit - Network accessline 30
| [Nature Skills](https://github.com/Yuan1z0825/nature-skills) | nature-writing 1.4.0, nature-polishing 6.5.0, nature-statistics 1.3.0 plus shared core | repository `main` commit `a6e6f3456f2065eb555afe8ed2c28637f3cd4e1b` | manifest-driven
radiology-skills/skills/radiology-radiogenomics/references/bulk-rna-literature-map-2024-2026.tsv
- Network accessline 1
id modality theme title publication_date journal doi pmid evidence_type concrete_content decision_changed constraints skill_action writing_requirement jif_value jif_year jif_source BK01 bulk RNA-seq raw reads raw-read discovery and feature - Network accessline 2
BK01 bulk RNA-seq raw reads raw-read discovery and feature generation Scalable and unsupervised discovery from raw sequencing reads using SPLASH2 2024-09-23 Nature Biotechnology 10.1038/s41587-024-02381-2 39313645 method; cross-technology d - Network accessline 3
BK02 bulk RNA-seq transcriptome assembly assembly QC Comprehensive assessment of transcriptome assembly quality using CATS 2026-04-20 Nature Communications 10.1038/s41467-026-72171-8 42002560 method; benchmark CATS jointly evaluates referen - Network accessline 4
BK03 long-read bulk RNA-seq long-read protocol and isoform quantification A systematic benchmark of Nanopore long-read RNA sequencing for transcript-level analysis in human cell lines 2025-03-13 Nature Methods 10.1038/s41592-025-02623-4 400 - Network accessline 5
BK04 long-read bulk RNA-seq allele-specific long-read inference SNP calling, haplotype phasing and allele-specific analysis with long RNA-seq reads 2026-03-30 Nature Methods 10.1038/s41592-026-03045-6 41912802 method; benchmark longcallR jo - Network accessline 6
BK05 long-read RNA-seq at single-cell pseudobulk and bulk resolution isoform discovery across resolutions Accurate long-read transcript discovery and quantification at single-cell, pseudo-bulk and bulk resolution with Isosceles 2024-08-25 N - Network accessline 7
BK06 count-based bulk RNA-seq differential expression and complex design edgeR v4: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets 2025-01-22 Nucleic Ac - Network accessline 8
BK07 bulk RNA-seq and functional genomics reference genome choice and mapping bias Benchmarking genome choice in functional genomics analyses 2026-05-26 Nature Communications 10.1038/s41467-026-73663-3 42185280 multi-omics benchmark The stu - Network accessline 9
BK08 bulk RNA-seq autopsy tissue pre-analytic tissue-processing artifacts Characterising processing conditions that artifactually bias human brain tissue transcriptomes 2026-02-17 Nature Communications 10.1038/s41467-026-68872-9 41702898 co - Network accessline 10
BK09 targeted clinical RNA-seq targeted assay utility and FFPE QC Clinical utility of targeted RNA sequencing in cancer molecular diagnostics 2025-07-17 Nature Medicine 10.1038/s41591-025-03848-8 40676318 prospective real-world clinical coh - Network accessline 11
BK10 targeted RNA splicing assay targeted alternative-splicing quantification Machine learning-optimized targeted detection of alternative splicing 2024-12-27 Nucleic Acids Research 10.1093/nar/gkae1260 39727154 method; experimental benchma - Network accessline 12
BK11 bulk RNA-seq across platforms alternative-splicing event analysis Shiba: a versatile computational method for systematic identification of differential RNA splicing across platforms 2025-02-25 Nucleic Acids Research 10.1093/nar/gkaf098 - Network accessline 13
BK12 bulk RNA-seq animal experiments sample size and biological replication Optimized murine sample sizes for RNA sequencing studies revealed from large scale comparative analysis 2025-11-19 Nature Communications 10.1038/s41467-025-65022-5 - Network accessline 14
BK13 calibrated bulk RNA-seq absolute transcriptomics and metrology A metrological foundation for absolute transcriptomics using International System of Units-anchored calibrators 2026-03-26 Nature Communications 10.1038/s41467-026-70582-1 - Network accessline 15
BK14 bulk RNA-seq with single-cell reference transcriptome-size bias in deconvolution Transcriptome size matters for single-cell RNA-seq normalization and bulk deconvolution 2025-02-01 Nature Communications 10.1038/s41467-025-56623-1 398931 - Network accessline 16
BK15 bulk RNA-seq with single-cell reference deconvolution batch effects Alleviating batch effects in cell type deconvolution with SCCAF-D 2024-12-30 Nature Communications 10.1038/s41467-024-55213-x 39738054 method; benchmark SCCAF-D direct - Network accessline 17
BK16 bulk tumor gene expression community benchmark of immune deconvolution Community assessment of methods to deconvolve cellular composition from bulk gene expression 2024-08-27 Nature Communications 10.1038/s41467-024-50618-0 39191725 co - Network accessline 18
BK17 bulk RNA-seq with FACS or single-cell reference pseudobulk-to-real shift and interpretable deconvolution An interpretable and adaptive autoencoder for efficient tissue deconvolution 2025-09-01 Nucleic Acids Research 10.1093/nar/gkaf821 - Network accessline 19
BK18 tissue-level bulk transcriptomics and multi-omics multi-omics deconvolution with incomplete reference DECODE: deep learning-based common deconvolution framework for various omics data 2026-03-02 Nature Methods 10.1038/s41592-026-03007- - Network accessline 20
BK19 bulk transcriptomics with PET pathology and clinical data radiotranscriptomic multimodal prediction Integration of clinical, pathological, radiological, and transcriptomic data improves prediction for first-line immunotherapy outcome i - Network accessline 21
BK20 bulk RNA-seq in randomized therapy study treatment-response signature and assay translation Deep molecular profiling of synovial biopsies in the STRAP trial identifies signatures predictive of treatment response to biologic therapies i - Network accessline 22
BK21 blood bulk transcriptomics cross-cohort clinical subtyping A consensus blood transcriptomic framework for sepsis 2025-09-30 Nature Medicine 10.1038/s41591-025-03964-5 41028542 consensus framework; multi-cohort validation MARS and GAinS - Network accessline 23
BK22 tumor bulk RNA-seq with DNA-derived purity tumor cell-state deconvolution Statescope: an integrative deconvolution framework for discovering cell states in tumors 2026-07-06 Nature Communications 10.1038/s41467-026-74997-8 42409797 met - Network accessline 24
BK23 bulk cancer transcriptomics deconvolution study-design guide A guide to transcriptomic deconvolution in cancer 2025-12-02 Nature Reviews Cancer 10.1038/s41568-025-00886-9 41331516 decision review The review organizes 43 methods into re - Network accessline 25
BK24 bulk expression clinical resource outcome association and cohort reuse PRECOG update: an augmented resource of clinical outcome associations with gene expression for adult, pediatric, and immunotherapy cohorts 2025-11-17 Nucleic Acids - Network accessline 26
BK25 public bulk perturbation RNA-seq resource genetic perturbation reference PerturbAtlas: a comprehensive atlas of public genetic perturbation bulk RNA-seq datasets 2024-10-01 Nucleic Acids Research 10.1093/nar/gkae851 39351872 resource P - Network accessline 27
BK26 bulk tumor transcriptomics resource tumor immune deconvolution reference TIMER3: an enhanced resource for tumor immune analysis 2025-05-08 Nucleic Acids Research 10.1093/nar/gkaf388 40337924 resource; analysis platform TIMER3 expands c - Network accessline 28
BK27 clinical bulk transcriptome resource therapy response and resistance validation CTR-DB 2.0: an updated cancer clinical transcriptome resource, expanding primary drug resistance and newly adding acquired resistance datasets and enhancin - Network accessline 29
BK28 public bulk RNA-seq stress resource stress-response confounding reference ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines 2025-11-20 Nucleic Acids Research 10.1093/nar/gkaf1174 41263110 re - Network accessline 30
BK29 bulk RNA-seq co-expression co-expression connectivity and cellular interpretation Analysis of gene co-expression connectivity dynamics implicates aberrant neuron-oligodendroglia interactions in schizophrenia 2026-07-16 Nature Communica - Network accessline 31
BK30 public multi-condition transcriptomes condition-specific co-expression networks Constructing gene co-functional and co-regulatory networks from public transcriptomes using condition-specific ensemble co-expression 2026-04-30 Nature Com - Network accessline 32
BK31 bulk RNA-seq exon inclusion splicing-factor activity inference Exon inclusion signatures enable accurate estimation of splicing factor activity 2026-03-12 Nature Communications 10.1038/s41467-026-69642-3 41820334 method benchmark; pert - Network accessline 33
BK32 tumor bulk transcriptomics in randomized trials prognostic versus treatment-predictive classifier Tumor transcriptome-wide expression classifiers predict treatment sensitivity in advanced prostate cancers 2025-08-26 Cell 10.1016/j.cell - Network accessline 34
BK33 bulk transcriptomics with proteomics RNA-to-protein prediction T2Pdecoder enables protein-centric analyses from transcriptomic data 2026-06-11 Nature Communications 10.1038/s41467-026-74209-3 42277023 method; benchmark T2Pdecoder model
radiology-skills/skills/radiology-radiogenomics/references/single-cell-literature-map-2024-2026.tsv
- Network accessline 1
id modality theme title publication_date journal journal_family doi pmid url evidence_type jif_value jif_year jif_source concrete_content decision_changed constraints skill_action writing_requirement SC01 scRNA-seq+cell imaging QC-doublets - Network accessline 2
SC01 scRNA-seq+cell imaging QC-doublets ImageDoubler: image-based doublet identification in single-cell sequencing 2025-01-02 Nature Communications Nature Portfolio 10.1038/s41467-024-55434-0 39747095 https://doi.org/10.1038/s41467-024-5543 - Network accessline 3
SC02 scRNA-seq platform-QC A comprehensive analysis framework for evaluating commercial single-cell RNA sequencing technologies 2024-12-16 Nucleic Acids Research Oxford University Press 10.1093/nar/gkae1186 39675380 https://doi.org/10.1093/ - Network accessline 4
SC03R scRNA-seq preprocessing-lncRNA Uncovering functional lncRNAs by scRNA-seq with ELATUS 2024-11-09 Nature Communications Nature Portfolio 10.1038/s41467-024-54005-7 39521797 https://doi.org/10.1038/s41467-024-54005-7 primary 18.1 2025 h - Network accessline 5
SC04R scRNA-seq nascent+mature RNA transcriptional-kinetics Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing data 2025-11-07 Nature Methods Nature Portfolio 10.1038/s - Network accessline 6
SC05 scRNA-seq feature-selection-integration Feature selection methods affect the performance of scRNA-seq data integration and querying 2025-03-13 Nature Methods Nature Portfolio 10.1038/s41592-025-02624-3 40082610 https://doi.org/10.1038/ - Network accessline 7
SC06 scRNA-seq integration-biology-preservation Recovery of biological signals lost in single-cell batch integration with CellANOVA 2024-11-26 Nature Biotechnology Nature Portfolio 10.1038/s41587-024-02463-1 39592777 https://doi.org/10.1038 - Network accessline 8
SC07R scRNA-seq pretrained-reference-models scvi-hub: an actionable repository for model-driven single-cell analysis 2025-09-08 Nature Methods Nature Portfolio 10.1038/s41592-025-02799-9 40921843 https://doi.org/10.1038/s41592-025-02799-9 p - Network accessline 9
SC08R single-cell multi-omics multiomics-integration Benchmarking algorithms for single-cell multi-omics prediction and integration 2024-09-25 Nature Methods Nature Portfolio 10.1038/s41592-024-02429-w 39322753 https://doi.org/10.1038/s4159 - Network accessline 10
SC09 scRNA-seq cohort-scale-heterogeneity Deep generative modeling of sample-level heterogeneity in single-cell genomics 2025-10-13 Nature Methods Nature Portfolio 10.1038/s41592-025-02808-x 41083897 https://doi.org/10.1038/s41592-025-02808 - Network accessline 11
SC10 scRNA-seq annotation-consensus Consensus prediction of cell type labels in single-cell data with popV 2024-11-20 Nature Genetics Nature Portfolio 10.1038/s41588-024-01993-3 39567746 https://doi.org/10.1038/s41588-024-01993-3 primary 25 - Network accessline 12
SC11R scRNA-seq annotation-LLM CASSIA: a multi-agent large language model for automated and interpretable cell annotation 2025-12-07 Nature Communications Nature Portfolio 10.1038/s41467-025-67084-x 41354665 https://doi.org/10.1038/s41467-0 - Network accessline 13
SC12 scRNA-seq cell-state-programs Reproducible single-cell annotation of programs underlying T cell subsets, activation states and functions 2025-09-03 Nature Methods Nature Portfolio 10.1038/s41592-025-02793-1 40903640 https://doi.org/10. - Network accessline 14
SC13R scRNA-seq metacell-validation mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis 2025-09-29 Nature Communications Nature Portfolio 10.1038/s41467-025-63626-5 41022768 https://doi.o - Network accessline 15
SC14 scRNA-seq+orthogonal DNA malignancy-RNA-CNV Benchmarking scRNA-seq copy number variation callers 2025-10-02 Nature Communications Nature Portfolio 10.1038/s41467-025-62359-9 41038850 https://doi.org/10.1038/s41467-025-62359-9 benchmark - Network accessline 16
SC15 scRNA-seq sample-aware-DE Method of moments framework for differential expression analysis of single-cell RNA sequencing data 2024-10-24 Cell Cell Press 10.1016/j.cell.2024.09.044 39454576 https://doi.org/10.1016/j.cell.2024.09.044 pri - Network accessline 17
SC16R Perturb-seq perturbation-DE Transcriptome-wide analysis of differential expression in perturbation atlases 2025-04-21 Nature Genetics Nature Portfolio 10.1038/s41588-025-02169-3 40259084 https://doi.org/10.1038/s41588-025-02169-3 prim - Network accessline 18
SC17 scRNA-seq sample-aware-DE FLASH-MM: fast and scalable single-cell differential expression analysis using linear mixed-effects models 2026-02-05 Nature Communications Nature Portfolio 10.1038/s41467-026-69063-2 41644528 https://doi.org/ - Network accessline 19
SC18 scRNA-seq weak-label-disease-cells HiDDEN: a machine learning method for detection of disease-relevant populations in case-control single-cell transcriptomics data 2024-11-02 Nature Communications Nature Portfolio 10.1038/s41467-024-53 - Network accessline 20
SC19 scRNA-seq+single-cell phenotyping weak-label-rare-cells Annotation-free discovery of disease-relevant cells in single-cell datasets 2025-08-27 Science Advances AAAS 10.1126/sciadv.adv5019 40864714 https://doi.org/10.1126/sciadv.adv5019 - Network accessline 21
SC20R scRNA-seq trajectory-transient-events Single-cell trajectory inference for detecting transient events in biological processes 2026-04-01 Nucleic Acids Research Oxford University Press 10.1093/nar/gkag368 42033223 https://doi.org/10.10 - Network accessline 22
SC21 scRNA-seq trajectory-DE Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing 2026-01-14 Nucleic Acids Research Oxford University Press 10.1093/nar/gkaf1494 41533563 https://d - Network accessline 23
SC22 paired scRNA-seq+scATAC-seq velocity-multiome ArchVelo: archetypal velocity modeling for single-cell multi-omic trajectories 2026-06-06 Nature Communications Nature Portfolio 10.1038/s41467-026-74000-4 42248920 https://doi.org/10.1038/ - Network accessline 24
SC23R lineage tracing+scRNA-seq lineage-maps Inferring cell differentiation maps from lineage tracing data 2025-12-08 Nature Methods Nature Portfolio 10.1038/s41592-025-02903-z 41360958 https://doi.org/10.1038/s41592-025-02903-z primary 28. - Network accessline 25
SC24 scRNA-seq cell-cell-communication Dissecting crosstalk induced by cell-cell communication using single-cell transcriptomic data 2025-07-01 Nature Communications Nature Portfolio 10.1038/s41467-025-61149-7 40593827 https://doi.org/10.10 - Network accessline 26
SC25 scRNA-seq cell-cell-communication FastCCC: a permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics studies 2025-12-13 Nature Communications Nature Portfolio - Network accessline 27
SC26 Perturb-seq gene-regulatory-networks D-SPIN constructs regulatory network models from scRNA-seq that reveal organizing principles of perturbation response 2026-05-12 Cell Cell Press 10.1016/j.cell.2026.04.028 42127893 https://doi.org/1 - Network accessline 28
SC27 Perturb-seq causal-GRN PSGRN: Gene regulatory network inference from single-cell perturbational data through self-training with synthetic gold standards 2026-04-29 Science Advances AAAS 10.1126/sciadv.aeb3376 42054465 https://doi.org/1 - Network accessline 29
SC28 Perturb-seq perturbation-heterogeneity Decoding heterogeneous single-cell perturbation responses 2025-02-26 Nature Cell Biology Nature Portfolio 10.1038/s41556-025-01626-9 40011559 https://doi.org/10.1038/s41556-025-01626-9 primary 22. - Network accessline 30
SC29 Perturb-seq perturbation-effect-modeling GPerturb: Gaussian process modelling of single-cell perturbation data 2025-07-01 Nature Communications Nature Portfolio 10.1038/s41467-025-61165-7 40593897 https://doi.org/10.1038/s41467-025-611 - Network accessline 31
SC30 Perturb-seq perturbation-prediction Benchmarking algorithms for generalizable single-cell perturbation response prediction 2025-12-11 Nature Methods Nature Portfolio 10.1038/s41592-025-02980-0 41381899 https://doi.org/10.1038/s41592-02 - Network accessline 32
SC31R Perturb-seq pathway-signatures Systematic reconstruction of molecular pathway signatures using scalable single-cell perturbation screens 2025-02-26 Nature Cell Biology Nature Portfolio 10.1038/s41556-025-01622-z 40011560 https://doi.o - Network accessline 33
SC32 Perturb-seq perturbation-evaluation Systema: a framework for evaluating genetic perturbation response prediction beyond systematic variation 2025-08-25 Nature Biotechnology Nature Portfolio 10.1038/s41587-025-02777-8 40854979 https://d - Network accessline 34
SC33R scRNA-seq drug perturbation foundation-model-drug-response scDrugMap: benchmarking large foundation models for drug response prediction 2025-12-11 Nature Communications Nature Portfolio 10.1038/s41467-025-67481-2 41381537 https://doi. - Network accessline 35
SC34 scRNA-seq foundation-model-scaling Evaluating the role of pretraining dataset size and diversity on single-cell foundation model performance 2026-06-09 Nature Methods Nature Portfolio 10.1038/s41592-026-03120-y 42265208 https://doi.org
radiology-skills/skills/radiology-radiogenomics/references/spatial-transcriptomics-literature-map-2024-2026.tsv
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id modality theme title publication_date journal doi pmid evidence_type concrete_content decision_changed constraints skill_action writing_requirement jif_value jif_year jif_source ST01 imaging spatial transcriptomics platform-benchmark Com - Network accessline 2
ST01 imaging spatial transcriptomics platform-benchmark Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples 2025-09-26 Nature Communications 10. - Network accessline 3
ST02 subcellular spatial transcriptomics platform-benchmark Systematic benchmarking of high-throughput subcellular spatial transcriptomics platforms across human tumors 2025-10-17 Nature Communications 10.1038/s41467-025-64292-3 41107232 be - Network accessline 4
ST03 imaging spatial transcriptomics platform-benchmark Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues 2025-11-20 Nature Communications 10.1038/s41467-025-64990-y 41266321 benchmark Benchmarks Xenium, M - Network accessline 5
ST04 imaging spatial transcriptomics reproducibility-metrics Standardized metrics for assessment and reproducibility of imaging-based spatial transcriptomics datasets 2025-12-03 Nature Biotechnology 10.1038/s41587-025-02811-9 41339526 bench - Network accessline 6
ST05 high-resolution spatial transcriptomics segmentation-free-analysis FICTURE: scalable segmentation-free analysis of submicron-resolution spatial transcriptomics 2024-09-12 Nature Methods 10.1038/s41592-024-02415-2 39266749 primary Uses - Network accessline 7
ST06 sequencing-based spatial transcriptomics spatial-QC SpotSweeper: spatially aware quality control for spatial transcriptomics 2025-06-06 Nature Methods 10.1038/s41592-025-02713-3 40481362 primary Uses local spatial neighbourhoods to dis - Network accessline 8
ST07 imaging spatial transcriptomics cell-segmentation Cell simulation as cell segmentation 2025-05-22 Nature Methods 10.1038/s41592-025-02697-0 40404994 primary Introduces Proseg, a probabilistic cell-simulation segmentation method, and be - Network accessline 9
ST08 imaging spatial transcriptomics segmentation-error-propagation Impact and correction of segmentation errors in spatial transcriptomics 2026-01-20 Nature Genetics 10.1038/s41588-025-02497-4 41559218 primary Reanalysis across tissues and - Network accessline 10
ST09 high-resolution spatial transcriptomics cell-assignment Accurate, scalable and cross-platform cell identification for high-resolution spatial transcriptomics 2026-05-20 Nature Genetics 10.1038/s41588-026-02610-1 42162410 primary Cellis - Network accessline 11
ST10 spatial transcriptomics plus histology histology-associated-gradient Inferring histology-associated gene expression gradients in spatial transcriptomic studies 2024-08-23 Nature Communications 10.1038/s41467-024-50904-x 39179527 primar - Network accessline 12
ST11 histopathology plus spatial transcriptomics histology-foundation-model A visual-omics foundation model to bridge histopathology with spatial transcriptomics 2025-05-29 Nature Methods 10.1038/s41592-025-02707-1 40442373 primary OmiCLIP - Network accessline 13
ST12 spatial transcriptomics plus scRNA-seq expression-imputation SpaIM: single-cell spatial transcriptomics imputation via style transfer 2025-08-23 Nature Communications 10.1038/s41467-025-63185-9 40849313 primary Uses style-transfer inte - Network accessline 14
ST13 spatial transcriptomics interpretable-representation Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP 2024-10-15 Nature Methods 10.1038/s41592-024-02463-8 39407016 primary STAMP uses a deep genera - Network accessline 15
ST14 spatial transcriptomics foundation model foundation-model-domain-inference Novae: a graph-based foundation model for spatial transcriptomics data 2025-12-10 Nature Methods 10.1038/s41592-025-02899-6 41372623 primary Trains a graph mode - Network accessline 16
ST15 multi-sample spatial transcriptomics multi-source-integration Interpretable, flexible and spatially aware integration of multiple spatial transcriptomics datasets from diverse sources 2026-04-27 Nature Genetics 10.1038/s41588-026-02579 - Network accessline 17
ST16 capture-based spatial transcriptomics plus histology cell-reconstruction STIE: Single-cell level deconvolution, convolution, and clustering in in situ capturing-based spatial transcriptomics 2024-08-30 Nature Communications 10.1038/s41 - Network accessline 18
ST17 spatial transcriptomics deconvolution fine-grained-deconvolution Ultra-precision deconvolution of spatial transcriptomics decodes immune heterogeneity and fate-defining programs in tissues 2026-03-20 Nature Communications 10.1038/s4146 - Network accessline 19
ST18 spatial transcriptomics SVG-taxonomy Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics data 2025-01-29 Nature Communications 10.1038/s41467-025-56080-w 39880807 review - Network accessline 20
ST19 spatial transcriptomics cell-type-specific-SVG Statistical identification of cell type-specific spatially variable genes in spatial transcriptomics 2025-01-26 Nature Communications 10.1038/s41467-025-56280-4 39865128 primary Celina use - Network accessline 21
ST20 subcellular spatial transcriptomics subcellular-expression ELLA: modeling subcellular spatial variation of gene expression within cells in high-resolution spatial transcriptomics 2025-11-11 Nature Communications 10.1038/s41467-025-6486 - Network accessline 22
ST21 single-cell-resolution spatial transcriptomics cell-cell-communication Mapping cellular interactions from spatially resolved transcriptomics data 2024-09-03 Nature Methods 10.1038/s41592-024-02408-1 39227721 primary Spacia uses multipl - Network accessline 23
ST22 single-cell-resolution spatial transcriptomics ligand-receptor-dynamics CytoSignal detects locations and dynamics of ligand-receptor signaling at cellular resolution from spatial transcriptomic data 2026-06-10 Nature Genetics 10.1038/s - Network accessline 24
ST23 spatial transcriptomics relay-networks CellNEST reveals cell-cell relay networks using attention mechanisms on spatial transcriptomics 2025-06-06 Nature Methods 10.1038/s41592-025-02721-3 40481363 primary CellNEST uses attention to inf - Network accessline 25
ST24 spatial transcriptomics plus histology multi-slice-domain-integration STAIG: Spatial transcriptomics analysis via image-aided graph contrastive learning for domain exploration and alignment-free integration 2025-01-27 Nature Communicat - Network accessline 26
ST25 time-series spatial transcriptomics spatiotemporal-trajectory STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport 2025-11-03 Nature Methods 10.1038/s41592-025-02855-4 41184554 primary Extends opt - Network accessline 27
ST26 spatial transcriptomics spatial-velocity Topological velocity inference from spatial transcriptomic data 2025-07-16 Nature Biotechnology 10.1038/s41587-025-02688-8 40670711 primary TopoVelo extends RNA velocity with spatially coupled d - Network accessline 28
ST27 2D-to-3D spatial transcriptomics 3D-reconstruction Bridging the dimensional gap from planar spatial transcriptomics to 3D cell atlases 2025-12-31 Nature Methods 10.1038/s41592-025-02969-9 41476112 primary SpatialZ generates virtual sec - Network accessline 29
ST28 spatial transcriptomics plus allelic counts CNA-phylogeography Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics 2024-10-30 Nature Methods 10.1038/s41592-024-02438-9 3947 - Network accessline 30
ST29 mutation profiling plus spatial transcriptomics clone-neighbourhoods Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with the neoplastic outcome of mouse colitis 2026-07-28 Nature Genetics - Network accessline 31
ST30 CRISPR plus imaging spatial transcriptomics spatial-perturbation Simultaneous CRISPR screening and spatial transcriptomics reveal intracellular, intercellular, and functional transcriptional circuits 2025-03-12 Cell 10.1016/j.cell.2025 - Network accessline 32
ST31 lineage tracing plus imaging spatial transcriptomics spatial-lineage SpaceBar enables single-cell-resolution clone tracing with imaging-based spatial transcriptomics 2025-12-18 Nature Methods 10.1038/s41592-025-02968-w 41413345 primary - Network accessline 33
ST32 cross-species single-cell spatial transcriptomics cross-species-atlas Cross-species single-cell spatial transcriptomic atlases of the cerebellar cortex 2024-09-27 Science 10.1126/science.ado3927 39325889 primary Builds macaque, marmose - Network accessline 34
ST33 whole-embryo MERFISH plus multi-omics developmental-atlas Whole-embryo spatial transcriptomics at subcellular resolution from gastrulation to organogenesis 2026-03-12 Science 10.1126/science.adt3439 41818362 primary weMERFISH directly
radiology-skills/skills/radiology-radiogenomics/references/transcriptomics-interpretation-framework.md
- Network accessline 448
- Feature selection changes integration, reference querying, label transfer and unseen-population detection ([PMID 40082610](https://pubmed.ncbi.nlm.nih.gov/40082610/)). - Network accessline 449
detection ([PMID 40082610](https://pubmed.ncbi.nlm.nih.gov/40082610/)). - Network accessline 450
- Cohort-scale single-cell studies need sample-level models, not only cell averages ([PMID 41083897](https://pubmed.ncbi.nlm.nih.gov/41083897/)). - Deep perturbation models must be compared with simple baselines and evaluated in unseen ce - Network accessline 451
([PMID 41083897](https://pubmed.ncbi.nlm.nih.gov/41083897/)). - Network accessline 452
- Deep perturbation models must be compared with simple baselines and evaluated in unseen cellular contexts ([PMID 40759747](https://pubmed.ncbi.nlm.nih.gov/40759747/); [PMID 41381899](https://pubmed.ncbi.nlm.nih.gov/41381899/)). - Network accessline 453
contexts ([PMID 40759747](https://pubmed.ncbi.nlm.nih.gov/40759747/); - Network accessline 454
[PMID 41381899](https://pubmed.ncbi.nlm.nih.gov/41381899/)). - Network accessline 455
- Larger single-cell pretraining corpora do not guarantee monotonic gains or clear scaling laws ([PMID 42265208](https://pubmed.ncbi.nlm.nih.gov/42265208/)). - Spatial QC cannot be copied directly from dissociated single-cell workflows; l - Network accessline 456
([PMID 42265208](https://pubmed.ncbi.nlm.nih.gov/42265208/)). - Network accessline 457
- Spatial QC cannot be copied directly from dissociated single-cell workflows; local and regional artifacts require spatially aware checks ([PMID 40481362](https://pubmed.ncbi.nlm.nih.gov/40481362/)). - Targeted spatial platforms require - Network accessline 458
artifacts require spatially aware checks ([PMID 40481362](https://pubmed.ncbi.nlm.nih.gov/40481362/)). - Network accessline 459
- Targeted spatial platforms require explicit panel, segmentation, specificity and transcript- contamination audits ([PMID 40082609](https://pubmed.ncbi.nlm.nih.gov/40082609/); [PMID 42062553](https://pubmed.ncbi.nlm.nih.gov/42062553/)) - Network accessline 460
contamination audits ([PMID 40082609](https://pubmed.ncbi.nlm.nih.gov/40082609/); - Network accessline 461
[PMID 42062553](https://pubmed.ncbi.nlm.nih.gov/42062553/)). - Network accessline 462
- Histology-to-transcriptome models are useful bridges, but their expression outputs are predictions and require measured spatial validation ([PMID 40442373](https://pubmed.ncbi.nlm.nih.gov/40442373/)). - Bulk deconvolution depends on tra - Network accessline 463
and require measured spatial validation ([PMID 40442373](https://pubmed.ncbi.nlm.nih.gov/40442373/)). - Network accessline 464
- Bulk deconvolution depends on transcriptome size, reference shift, batch, cell-type similarity and orthogonal benchmarking ([PMID 39893178](https://pubmed.ncbi.nlm.nih.gov/39893178/); [PMID 39191725](https://pubmed.ncbi.nlm.nih.gov/39 - Network accessline 465
orthogonal benchmarking ([PMID 39893178](https://pubmed.ncbi.nlm.nih.gov/39893178/); - Network accessline 466
[PMID 39191725](https://pubmed.ncbi.nlm.nih.gov/39191725/); - Network accessline 467
[PMID 40889155](https://pubmed.ncbi.nlm.nih.gov/40889155/); - Network accessline 468
[PMID 41772096](https://pubmed.ncbi.nlm.nih.gov/41772096/)). - Network accessline 469
- Raising a fold-change cutoff does not repair an underpowered bulk RNA-seq experiment ([PMID 41261110](https://pubmed.ncbi.nlm.nih.gov/41261110/)). - Clinical transcriptomic subtypes or treatment biomarkers need multi-cohort consensus, i - Network accessline 470
([PMID 41261110](https://pubmed.ncbi.nlm.nih.gov/41261110/)). - Network accessline 471
- Clinical transcriptomic subtypes or treatment biomarkers need multi-cohort consensus, independent validation and, for treatment prediction, an explicit biomarker-by-treatment interaction ([PMID 41028542](https://pubmed.ncbi.nlm.nih.go - Network accessline 472
validation and, for treatment prediction, an explicit biomarker-by-treatment interaction ([PMID 41028542](https://pubmed.ncbi.nlm.nih.gov/41028542/); [PMID 40865526](https://pubmed.ncbi.nlm.nih.gov/40865526/)). - Network accessline 473
([PMID 41028542](https://pubmed.ncbi.nlm.nih.gov/41028542/); - Network accessline 474
[PMID 40865526](https://pubmed.ncbi.nlm.nih.gov/40865526/)).
radiology-skills/skills/radiology-radiogenomics/references/transparent-peer-review-corpus-2024-2026.tsv
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record_id title journal publication_date doi venue_tier venue_selection_basis journal_metric_note primary_stratum secondary_modalities study_content article_url review_file_url review_material_type review_rounds reviewer_count review_file_s - Network accessline 2
TPR001 A fully open AI foundation model applied to chest radiography Nature 2025-06-11 10.1038/s41586-025-09079-8 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. 2025 JIF 5 - Network accessline 3
TPR002 Foundation models for fast, label-free detection of glioma infiltration Nature 2024-11-13 10.1038/s41586-024-08169-3 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. - Network accessline 4
TPR003 Study design features increase replicability in brain-wide association studies Nature 2024-11-27 10.1038/s41586-024-08260-9 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review - Network accessline 5
TPR004 Longer scans boost prediction and cut costs in brain-wide association studies Nature 2025-07-16 10.1038/s41586-025-09250-1 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review - Network accessline 6
TPR005 Comprehensive echocardiogram evaluation with view primed vision language AI Nature 2025-11-11 10.1038/s41586-025-09850-x 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review fi - Network accessline 7
TPR006 Merlin: a computed tomography vision–language foundation model and dataset Nature 2026-03-04 10.1038/s41586-026-10181-8 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review fil - Network accessline 8
TPR007 AI-enabled virtual spatial proteomics from histopathology for interpretable biomarker discovery in lung cancer Nature Medicine 2026-01-05 10.1038/s41591-025-04060-4 2-major-specialist Major Nature research journal; selected for clini - Network accessline 9
TPR008 AI-based chest X-ray prioritization in the lung cancer diagnostic pathway: the LungIMPACT randomized controlled trial Nature Medicine 2026-03-24 10.1038/s41591-026-04253-5 2-major-specialist Major Nature research journal; selected fo - Network accessline 10
TPR009 A vision–language foundation model for the generation of realistic chest X-ray images Nature Biomedical Engineering 2024-08-26 10.1038/s41551-024-01246-y 2-major-specialist Major Nature biomedical-engineering journal; selected for im - Network accessline 11
TPR010 A foundation model for enhancing magnetic resonance images and downstream segmentation, registration and diagnostic tasks Nature Biomedical Engineering 2024-12-05 10.1038/s41551-024-01283-7 2-major-specialist Major Nature biomedical- - Network accessline 12
TPR011 A robust and scalable framework for hallucination detection in virtual tissue staining and digital pathology Nature Biomedical Engineering 2025-06-16 10.1038/s41551-025-01421-9 2-major-specialist Major Nature biomedical-engineering j - Network accessline 13
TPR012 A generative model uses healthy and diseased image pairs for pixel-level chest X-ray pathology localization Nature Biomedical Engineering 2025-07-14 10.1038/s41551-025-01456-y 2-major-specialist Major Nature biomedical-engineering jo - Network accessline 14
TPR013 Unconditional latent diffusion models memorize patient imaging data Nature Biomedical Engineering 2025-08-11 10.1038/s41551-025-01468-8 2-major-specialist Major Nature biomedical-engineering journal; selected for imaging/AI relevance - Network accessline 15
TPR014 A visually grounded language model for fetal ultrasound understanding Nature Biomedical Engineering 2026-01-15 10.1038/s41551-025-01578-3 2-major-specialist Major Nature biomedical-engineering journal; selected for imaging/AI relevan - Network accessline 16
TPR015 Generalist foundation models from a multimodal dataset for 3D computed tomography Nature Biomedical Engineering 2026-02-12 10.1038/s41551-025-01599-y 2-major-specialist Major Nature biomedical-engineering journal; selected for imagin - Network accessline 17
TPR016 Learning neuroimaging models from health system-scale data Nature Biomedical Engineering 2026-02-06 10.1038/s41551-025-01608-0 2-major-specialist Major Nature biomedical-engineering journal; selected for imaging/AI relevance and an o - Network accessline 18
TPR017 A generalizable deep learning system for cardiac MRI Nature Biomedical Engineering 2026-03-25 10.1038/s41551-026-01637-3 2-major-specialist Major Nature biomedical-engineering journal; selected for imaging/AI relevance and an officia - Network accessline 19
TPR018 Large-scale multi-sequence pretraining for generalizable MRI analysis in versatile clinical applications Nature Biomedical Engineering 2026-07-13 10.1038/s41551-026-01740-5 2-major-specialist Major Nature biomedical-engineering journ - Network accessline 20
TPR019 CLEAR: an auditable foundation model for radiology grounded in clinical concepts Nature Biomedical Engineering 2026-07-22 10.1038/s41551-026-01741-4 2-major-specialist Major Nature biomedical-engineering journal; selected for imaging - Network accessline 21
TPR020 A visual–omics foundation model to bridge histopathology with spatial transcriptomics Nature Methods 2025-05-29 10.1038/s41592-025-02707-1 2-major-specialist Major Nature methods journal; selected for measurement or computational-met - Network accessline 22
TPR021 Explainable multimodal deep learning for predicting thyroid cancer lateral lymph node metastasis using ultrasound imaging Nature Communications 2025-08-01 10.1038/s41467-025-62042-z 3-high-impact-fallback High-impact Nature Portfolio - Network accessline 23
TPR022 A clinically accessible small multimodal radiology model and evaluation metric for chest X-ray findings Nature Communications 2025-04-01 10.1038/s41467-025-58344-x 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary - Network accessline 24
TPR023 AI-Based screening for thoracic aortic aneurysms in routine breast MRI Nature Communications 2025-06-12 10.1038/s41467-025-59694-2 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topi - Network accessline 25
TPR024 A large model for non-invasive and personalized management of breast cancer from multiparametric MRI Nature Communications 2025-04-17 10.1038/s41467-025-58798-z 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary jo - Network accessline 26
TPR025 Self-supervised learning reveals clinically relevant histomorphological patterns for therapeutic strategies in colon cancer Nature Communications 2025-03-08 10.1038/s41467-025-57541-y 3-high-impact-fallback High-impact Nature Portfol - Network accessline 27
TPR026 Large-scale generative tumor synthesis in computed tomography images for improving tumor recognition Nature Communications 2025-12-11 10.1038/s41467-025-66071-6 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary jo - Network accessline 28
TPR027 A multimodal knowledge-enhanced whole-slide pathology foundation model Nature Communications 2025-12-12 10.1038/s41467-025-66220-x 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topi - Network accessline 29
TPR028 A lung CT vision foundation model facilitating disease diagnosis and medical imaging Nature Communications 2025-12-03 10.1038/s41467-025-66620-z 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted - Network accessline 30
TPR029 Adaptive compression framework for giga-pixel whole slide images Nature Communications 2025-12-03 10.1038/s41467-025-66889-0 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topic rele - Network accessline 31
TPR030 Generating crossmodal gene expression from cancer histopathology improves multimodal AI predictions Nature Communications 2025-12-31 10.1038/s41467-025-66961-9 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary jou - Network accessline 32
TPR031 Automated MRI system for clinically significant prostate cancer detection development validation and real-world implementation Nature Communications 2025-11-23 10.1038/s41467-025-66593-z 3-high-impact-fallback High-impact Nature Port - Network accessline 33
TPR032 Reducing bulky medical images via shape-texture decoupled deep neural networks Nature Communications 2026-01-15 10.1038/s41467-026-68292-9 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only w - Network accessline 34
TPR033 Multi-modal AI for opportunistic screening, staging and progression risk stratification of steatotic liver disease Nature Communications 2026-02-11 10.1038/s41467-026-68414-3 3-high-impact-fallback High-impact Nature Portfolio multid - Network accessline 35
TPR034 Explainable AI-based analysis of human pancreas sections identifies traits of type 2 diabetes Nature Communications 2026-02-09 10.1038/s41467-026-69295-2 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; - Network accessline 36
TPR035 A DeepSeek-powered AI system for automated chest radiograph interpretation in clinical practice Nature Communications 2026-05-07 10.1038/s41467-026-72680-6 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal - Network accessline 37
TPR036 Multi-modal AI for comprehensive breast cancer prognostication Nature Communications 2026-05-20 10.1038/s41467-026-73088-y 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topic releva - Network accessline 38
TPR037 AI digital pathology as a key tool providing in-depth understanding of the progression and regression of MASH and fibrosis in male mouse models Nature Communications 2026-07-22 10.1038/s41467-026-73370-z 3-high-impact-fallback High-i - Network accessline 39
TPR038 Multimodal deep learning model for AI-based functional prognostic risk stratification in patients undergoing radical nephrectomy Nature Communications 2026-05-28 10.1038/s41467-026-73813-7 3-high-impact-fallback High-impact Nature Po - Network accessline 40
TPR039 Towards robust foundation models for digital pathology Nature Communications 2026-06-11 10.1038/s41467-026-73923-2 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topic relevance and - Network accessline 41
TPR040 A disease-centric vision-language foundation model for precision oncology in kidney cancer Nature Communications 2026-06-08 10.1038/s41467-026-74175-w 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; adm - Network accessline 42
TPR041 Portable, real-time 3D ultrasound for operator-independent breast imaging Nature Communications 2026-07-01 10.1038/s41467-026-74708-3 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with t - Network accessline 43
TPR042 Prediction of microvascular invasion in hepatocellular carcinoma using contrast-enhanced ultrasound and deep learning Nature Communications 2026-07-10 10.1038/s41467-026-74985-y 3-high-impact-fallback High-impact Nature Portfolio mul - Network accessline 44
TPR043 Integrated device for optoacoustically-guided ultrasound surgery Nature Communications 2026-07-21 10.1038/s41467-026-75692-4 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topic rele - Network accessline 45
TPR044 A benchmark study of vision and pathology foundation models for computational pathology Nature Communications 2026-07-24 10.1038/s41467-026-76004-6 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitt - Network accessline 46
TPR045 Contrastive language image pretraining for a cardiac magnetic resonance image embedding with zero-shot capabilities Nature Communications 2026-05-21 10.1038/s41467-026-73022-2 3-high-impact-fallback High-impact Nature Portfolio multi - Network accessline 47
TPR046 Spatial joint profiling of DNA methylome and transcriptome in tissues Nature 2025-09-03 10.1038/s41586-025-09478-x 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. 20 - Network accessline 48
TPR047 Programmable control of spatial transcriptome in live cells and neurons Nature 2025-05-21 10.1038/s41586-025-09020-z 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. - Network accessline 49
TPR048 Spatial multi-omics reveals cell-type-specific nuclear compartments Nature 2025-04-09 10.1038/s41586-025-08838-x 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. 2025 - Network accessline 50
TPR049 Spatial transcriptomic clocks reveal cell proximity effects in brain ageing Nature 2024-12-18 10.1038/s41586-024-08334-8 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review fi - Network accessline 51
TPR050 A spatial human thymus cell atlas mapped to a continuous tissue axis Nature 2024-11-20 10.1038/s41586-024-07944-6 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. 202 - Network accessline 52
TPR051 Single-cell multi-omics map of human fetal blood in Down syndrome Nature 2024-09-25 10.1038/s41586-024-07946-4 1-main-journal Nature flagship; selected for venue standing, scope relevance and an official full peer-review file. 2025 J - Network accessline 53
TPR052 Spatially resolved single-cell analyses of human meningioma identify novel cell states influencing tumor microenvironment and progression Nature Genetics 2026-06-09 10.1038/s41588-026-02615-w 2-major-specialist Major Nature genetics - Network accessline 54
TPR053 Mosaic integration of spatial multi-omics with SpaMosaic Nature Genetics 2026-04-24 10.1038/s41588-026-02573-3 2-major-specialist Major Nature genetics journal; selected for genomics-method or mechanism relevance and an official full - Network accessline 55
TPR054 Single-cell spatial transcriptomic analysis of human skin anatomy Nature Genetics 2026-03-23 10.1038/s41588-026-02552-8 2-major-specialist Major Nature genetics journal; selected for genomics-method or mechanism relevance and an offi - Network accessline 56
TPR055 Single-cell atlas of the transcriptome and chromatin accessibility in the human retina Nature Genetics 2026-01-23 10.1038/s41588-025-02454-1 2-major-specialist Major Nature genetics journal; selected for genomics-method or mechanism - Network accessline 57
TPR056 Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease Nature Genetics 2025-11-24 10.1038/s41588-025-02407-8 2-major-specialist Major Nature genetics journal; selected for genomics-method or - Network accessline 58
TPR057 Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs Nature Genetics 2025-10-20 10.1038/s41588-025-02344-6 2-major-specialist Major Nature genetics journal; selected for genomics-method or me - Network accessline 59
TPR058 Spatial signatures for predicting immunotherapy outcomes using multi-omics in non-small cell lung cancer Nature Genetics 2025-10-10 10.1038/s41588-025-02351-7 2-major-specialist Major Nature genetics journal; selected for genomics-me - Network accessline 60
TPR059 Single-cell and spatial transcriptomics reveal mechanisms of radioresistance and immune escape in recurrent nasopharyngeal carcinoma Nature Genetics 2025-07-21 10.1038/s41588-025-02253-8 2-major-specialist Major Nature genetics journ - Network accessline 61
TPR060 High-definition spatial transcriptomic profiling of immune cell populations in colorectal cancer Nature Genetics 2025-06-05 10.1038/s41588-025-02193-3 2-major-specialist Major Nature genetics journal; selected for genomics-method or - Network accessline 62
TPR061 Multiomic single-cell profiling identifies critical regulators of postnatal brain Nature Genetics 2025-02-17 10.1038/s41588-025-02083-8 2-major-specialist Major Nature genetics journal; selected for genomics-method or mechanism relev - Network accessline 63
TPR062 Transcript-specific enrichment enables profiling of rare cell states via single-cell RNA sequencing Nature Genetics 2025-01-08 10.1038/s41588-024-02036-7 2-major-specialist Major Nature genetics journal; selected for genomics-method - Network accessline 64
TPR063 Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition Nature Genetics 2025-01-02 10.1038/s41588-024-01997-z 2-major-specialist Major Nature genetics journal; selec - Network accessline 65
TPR064 Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases Nature Genetics 2024-12-03 10.1038/s41588-024-02019-8 2-major-specialist Major Nature genetics jou - Network accessline 66
TPR065 Single-cell multiomics analysis reveals dynamic clonal evolution and targetable phenotypes in acute myeloid leukemia with complex karyotype Nature Genetics 2024-11-25 10.1038/s41588-024-01999-x 2-major-specialist Major Nature genetic - Network accessline 67
TPR066 Spatial and single-nucleus transcriptomic analysis of genetic and sporadic forms of Alzheimer’s disease Nature Genetics 2024-11-22 10.1038/s41588-024-01961-x 2-major-specialist Major Nature genetics journal; selected for genomics-met - Network accessline 68
TPR067 Resolving sensitivity, specificity and signal contamination in Xenium spatial transcriptomics Nature Methods 2026-04-30 10.1038/s41592-026-03089-8 2-major-specialist Major Nature methods journal; selected for measurement or computati - Network accessline 69
TPR068 3d-OT: a deep geometry-aware framework for heterogeneous slices alignment of spatial multi-omics Nature Methods 2026-03-27 10.1038/s41592-026-03034-9 2-major-specialist Major Nature methods journal; selected for measurement or comput - Network accessline 70
TPR069 SpaceBar enables single-cell-resolution clone tracing with imaging-based spatial transcriptomics Nature Methods 2025-12-18 10.1038/s41592-025-02968-w 2-major-specialist Major Nature methods journal; selected for measurement or comput - Network accessline 71
TPR070 Benchmarking algorithms for generalizable single-cell perturbation response prediction Nature Methods 2025-12-11 10.1038/s41592-025-02980-0 2-major-specialist Major Nature methods journal; selected for measurement or computational-me - Network accessline 72
TPR071 Novae: a graph-based foundation model for spatial transcriptomics data Nature Methods 2025-12-10 10.1038/s41592-025-02899-6 2-major-specialist Major Nature methods journal; selected for measurement or computational-method relevance a - Network accessline 73
TPR072 STORIES: learning cell fate landscapes from spatial transcriptomics using optimal transport Nature Methods 2025-11-03 10.1038/s41592-025-02855-4 2-major-specialist Major Nature methods journal; selected for measurement or computation - Network accessline 74
TPR073 Nicheformer: a foundation model for single-cell and spatial omics Nature Methods 2025-10-30 10.1038/s41592-025-02814-z 2-major-specialist Major Nature methods journal; selected for measurement or computational-method relevance and an - Network accessline 75
TPR074 PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories Nature Methods 2025-10-23 10.1038/s41592-025-02870-5 2-major-specialist Major Nature methods journal; selected for meas - Network accessline 76
TPR075 scooby: modeling multimodal genomic profiles from DNA sequence at single-cell resolution Nature Methods 2025-10-22 10.1038/s41592-025-02854-5 2-major-specialist Major Nature methods journal; selected for measurement or computational- - Network accessline 77
TPR076 Multitask benchmarking of single-cell multimodal omics integration methods Nature Methods 2025-10-13 10.1038/s41592-025-02856-3 2-major-specialist Major Nature methods journal; selected for measurement or computational-method relevan - Network accessline 78
TPR077 Cancer subclone detection based on DNA copy number in single-cell and spatial omic sequencing data Nature Methods 2025-09-15 10.1038/s41592-025-02773-5 2-major-specialist Major Nature methods journal; selected for measurement or comp - Network accessline 79
TPR078 SpotSweeper: spatially aware quality control for spatial transcriptomics Nature Methods 2025-06-06 10.1038/s41592-025-02713-3 2-major-specialist Major Nature methods journal; selected for measurement or computational-method relevance - Network accessline 80
TPR079 scMultiSim: simulation of single-cell multi-omics and spatial data guided by gene regulatory networks and cell–cell interactions Nature Methods 2025-04-17 10.1038/s41592-025-02651-0 2-major-specialist Major Nature methods journal; se - Network accessline 81
TPR080 Spotiphy enables single-cell spatial whole transcriptomics across an entire section Nature Methods 2025-03-12 10.1038/s41592-025-02622-5 2-major-specialist Major Nature methods journal; selected for measurement or computational-metho - Network accessline 82
TPR081 Multiplexed spatial mapping of chromatin features, transcriptome and proteins in tissues Nature Methods 2025-01-27 10.1038/s41592-024-02576-0 2-major-specialist Major Nature methods journal; selected for measurement or computational- - Network accessline 83
TPR082 High-resolution, noninvasive single-cell lineage tracing in mice and humans based on DNA methylation epimutations Nature Methods 2025-01-16 10.1038/s41592-024-02567-1 2-major-specialist Major Nature methods journal; selected for meas - Network accessline 84
TPR083 Resolving tissue complexity by multimodal spatial omics modeling with MISO Nature Methods 2025-01-15 10.1038/s41592-024-02574-2 2-major-specialist Major Nature methods journal; selected for measurement or computational-method relevan - Network accessline 85
TPR084 Benchmarking algorithms for single-cell multi-omics prediction and integration Nature Methods 2024-09-25 10.1038/s41592-024-02429-w 2-major-specialist Major Nature methods journal; selected for measurement or computational-method rel - Network accessline 86
TPR085 Inferring pattern-driving intercellular flows from single-cell and spatial transcriptomics Nature Methods 2024-08-26 10.1038/s41592-024-02380-w 2-major-specialist Major Nature methods journal; selected for measurement or computationa - Network accessline 87
TPR086 Celcomen: spatial causal disentanglement for single-cell and tissue perturbation modeling Nature Communications 2026-03-18 10.1038/s41467-026-69856-5 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admi - Network accessline 88
TPR087 Spatial perturb-seq: single-cell functional genomics within intact tissue architecture Nature Communications 2026-02-21 10.1038/s41467-026-69677-6 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitte - Network accessline 89
TPR088 SIDISH integrates single-cell and bulk transcriptomics to identify high-risk cells and guide precision therapeutics through in silico perturbation Nature Communications 2025-12-10 10.1038/s41467-025-66162-4 3-high-impact-fallback Hig - Network accessline 90
TPR089 Single-cell and spatial transcriptome analyses reveal tumor heterogeneity and immune remodeling involved in pituitary neuroendocrine tumor progression Nature Communications 2025-05-30 10.1038/s41467-025-60028-5 3-high-impact-fallback - Network accessline 91
TPR090 Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19 Nature Communications 2025-03-10 10.1038/s41467-025-56473-x 3-high-impact-fallback High-impact - Network accessline 92
TPR091 Spatial integration of multi-omics single-cell data with SIMO Nature Communications 2025-02-01 10.1038/s41467-025-56523-4 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitted only with topic relevan - Network accessline 93
TPR092 Multimodal single cell-resolved spatial proteomics reveal pancreatic tumor heterogeneity Nature Communications 2024-11-21 10.1038/s41467-024-54438-0 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admit - Network accessline 94
TPR093 Unraveling the spatial organization and development of human thymocytes through integration of spatial transcriptomics and single-cell multi-omics profiling Nature Communications 2024-09-06 10.1038/s41467-024-51767-y 3-high-impact-fa - Network accessline 95
TPR094 Single-cell and spatial transcriptome analyses reveal tertiary lymphoid structures linked to tumour progression and immunotherapy response in nasopharyngeal carcinoma Nature Communications 2024-09-04 10.1038/s41467-024-52153-4 3-high - Network accessline 96
TPR095 Integration of clinical, pathological, radiological, and transcriptomic data improves prediction for first-line immunotherapy outcome in metastatic non-small cell lung cancer Nature Communications 2025-01-12 10.1038/s41467-025-55847- - Network accessline 97
TPR096 Transcriptome size matters for single-cell RNA-seq normalization and bulk deconvolution Nature Communications 2025-02-01 10.1038/s41467-025-56623-1 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; admitt - Network accessline 98
TPR097 Feature selection methods affect the performance of scRNA-seq data integration and querying Nature Methods 2025-03-13 10.1038/s41592-025-02624-3 2-major-specialist Major Nature methods journal; selected for measurement or computation - Network accessline 99
TPR098 FICTURE: scalable segmentation-free analysis of submicron-resolution spatial transcriptomics Nature Methods 2024-09-12 10.1038/s41592-024-02415-2 2-major-specialist Major Nature methods journal; selected for measurement or computatio - Network accessline 100
TPR099 Inferring histology-associated gene expression gradients in spatial transcriptomic studies Nature Communications 2024-08-23 10.1038/s41467-024-50904-x 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal; adm - Network accessline 101
TPR100 Dissecting crosstalk induced by cell-cell communication using single-cell transcriptomic data Nature Communications 2025-07-01 10.1038/s41467-025-61149-7 3-high-impact-fallback High-impact Nature Portfolio multidisciplinary journal;
radiology-skills/skills/radiology-radiogenomics/references/transparent-peer-review-lessons-2024-2026.md
- Network accessline 29
The [2025 official Nature Portfolio metrics](https://www.nature.com/nature-portfolio/about-journals/journal-metrics) - Network accessline 48
editor/reviewer discussion, or prove that a published paper has no defect. Nature states that its public files may exclude confidential discussion in its [peer-review policy](https://www.nature.com/nature/editorial-policies/peer-review), an - Network accessline 49
public files may exclude confidential discussion in its [peer-review policy](https://www.nature.com/nature/editorial-policies/peer-review), and its [editorial criteria](https://www.nature.com/nature/for-authors/editorial-criteria-and-proces - Network accessline 50
[peer-review policy](https://www.nature.com/nature/editorial-policies/peer-review), and its [editorial criteria](https://www.nature.com/nature/for-authors/editorial-criteria-and-processes) require point-by-point responses while allowing edi - Network accessline 51
[editorial criteria](https://www.nature.com/nature/for-authors/editorial-criteria-and-processes)
radiology-skills/skills/radiology-radiogenomics/scripts/audit_transcriptomics_literature_maps.ps1
- Executable scriptline 1
Executable file - Network accessline 146
$pmids = @($allRows | ForEach-Object { [string]$_.pmid } | Sort-Object -Unique) $body = @{ db = 'pubmed'; id = ($pmids -join ','); retmode = 'json' } $response = Invoke-RestMethod -Method Post -Uri 'https://eutils.ncbi.nlm.nih.gov/e - Network accessline 147
$body = @{ db = 'pubmed'; id = ($pmids -join ','); retmode = 'json' } $response = Invoke-RestMethod -Method Post -Uri 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi' -Body $body $resolved = @($response.result.uids) - Network accessline 148
$response = Invoke-RestMethod -Method Post -Uri 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi' -Body $body
radiology-skills/skills/radiology-radiogenomics/scripts/audit_transparent_peer_review_corpus.ps1
- Executable scriptline 1
Executable file - Network accessline 160
} elseif ([string]$row.journal -like 'Nature*' -and [string]$row.journal_metric_note -notmatch 'https://www\.nature\.com/nature-portfolio/about-journals/journal-metrics') { - Network accessline 161
elseif ([string]$row.journal -like 'Nature*' -and [string]$row.journal_metric_note -notmatch 'https://www\.nature\.com/nature-portfolio/about-journals/journal-metrics') { Add-AuditError "[$id] Nature Portfolio metric note la - Network accessline 162
[string]$row.journal_metric_note -notmatch 'https://www\.nature\.com/nature-portfolio/about-journals/journal-metrics') {
radiology-skills/skills/radiology-radiogenomics/scripts/test_scientific_handoff.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-radiogenomics/scripts/validate_scientific_handoff.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-radiogenomics/scripts/validate_skill_routes.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-radiomics/tests/test_radiomics_boundary_contracts.py
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-reporting/references/guideline-consensus-qualitative-economic-implementation.md
- Network accessline 43
- [RIGHT](https://www.equator-network.org/reporting-guidelines/right-statement/) - Network accessline 44
- [AGREE II instrument](https://www.agreetrust.org/resource-centre/agree-ii/) - Network accessline 45
- [ACCORD](https://www.equator-network.org/reporting-guidelines/accord-accurate-consensus-reporting-document-a-reporting-guideline-for-consensus-methods-in-biomedicine/) - Network accessline 46
- [COREQ](https://www.equator-network.org/reporting-guidelines/coreq/) - Network accessline 47
- [SRQR](https://www.equator-network.org/reporting-guidelines/srqr/) - Network accessline 48
- [CHEERS 2022](https://www.equator-network.org/reporting-guidelines/cheers/) - Network accessline 49
- [StaRI](https://www.equator-network.org/reporting-guidelines/stari-statement/) - Network accessline 50
- [GRIPP2](https://www.equator-network.org/reporting-guidelines/gripp2-reporting-checklists-tools-to-improve-reporting-of-patient-and-public-involvement-in-research/)
radiology-skills/skills/radiology-reporting/references/guideline-versions.md
- Network accessline 59
| Guideline | Canonical publisher record | DOI | Checked | Fact reconciled | |---|---|---|---|---| | STARD-AI | [Nature Medicine guideline](https://www.nature.com/articles/s41591-025-03953-8) | `10.1038/s41591-025-03953-8` | 2026-08-22 | 20 - Network accessline 60
|---|---|---|---|---| | STARD-AI | [Nature Medicine guideline](https://www.nature.com/articles/s41591-025-03953-8) | `10.1038/s41591-025-03953-8` | 2026-08-22 | 2025 publication; 40 total checklist items; 4 modified plus 14 new items, with - Network accessline 61
| STARD-AI | [Nature Medicine guideline](https://www.nature.com/articles/s41591-025-03953-8) | `10.1038/s41591-025-03953-8` | 2026-08-22 | 2025 publication; 40 total checklist items; 4 modified plus 14 new items, with the added material als - Network accessline 62
| TRIPOD-Cluster | [BMJ checklist](https://www.bmj.com/content/380/bmj-2022-071018) and [explanation/elaboration](https://www.bmj.com/content/380/bmj-2022-071058) | `10.1136/bmj-2022-071018`; `10.1136/bmj-2022-071058` | 2026-08-22 | Publish - Network accessline 63
| QUADAS-3 | [University of Bristol QUADAS hub](https://www.bristol.ac.uk/population-health-sciences/projects/quadas/), [tool page](https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/) and [resources/latest versio - Network accessline 64
| QUADAS-C | [University of Bristol QUADAS-C](https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-c/) | `10.7326/M21-2234` | 2026-08-23 | Bristol states that QUADAS-C cannot be used alone, recommends it alongside QUA - Network accessline 65
| QUADAS-2 (legacy) | [University of Bristol QUADAS-2 history](https://www.bristol.ac.uk/population-health-sciences/projects/quadas/history/quadas-2/) | `10.7326/0003-4819-155-8-201110180-00009` | 2026-08-23 | Bristol explicitly marks the p - Network accessline 66
| RIGHT / AGREE II / ACCORD | [EQUATOR RIGHT](https://www.equator-network.org/reporting-guidelines/right-statement/), [AGREE II](https://www.agreetrust.org/resource-centre/agree-ii/), [EQUATOR ACCORD](https://www.equator-network.org/reporti - Network accessline 67
| COREQ / SRQR / CHEERS / StaRI / GRIPP2 | [EQUATOR reporting-guideline registry](https://www.equator-network.org/reporting-guidelines/) | see canonical rows | 2026-08-23 | current named versions and scope boundaries verified; reporting com
radiology-skills/skills/radiology-reporting/references/prisma-general-scoping.md
- Network accessline 9
- PRISMA 2020 statement and checklist: <https://www.prisma-statement.org/prisma-2020> and - Network accessline 10
<https://www.prisma-statement.org/prisma-2020-checklist> - Network accessline 11
- PRISMA-ScR: <https://www.prisma-statement.org/scoping> and - Network accessline 12
<https://www.equator-network.org/reporting-guidelines/prisma-scr/> - Network accessline 13
- PRISMA-S search-reporting extension: <https://www.equator-network.org/reporting-guidelines/prisma-s/> - PRISMA-P protocol reporting: - Network accessline 14
<https://www.equator-network.org/reporting-guidelines/prisma-s/> - Network accessline 15
- PRISMA-P protocol reporting: <https://www.equator-network.org/reporting-guidelines/prisma-protocols/> - PRISMA-LSR living-review reporting: - Network accessline 16
<https://www.equator-network.org/reporting-guidelines/prisma-protocols/> - Network accessline 17
- PRISMA-LSR living-review reporting: <https://www.equator-network.org/reporting-guidelines/prisma-lsr/> - PRISMA-COSMIN for outcome measurement instrument reviews: - Network accessline 18
<https://www.equator-network.org/reporting-guidelines/prisma-lsr/> - Network accessline 20
<https://www.equator-network.org/reporting-guidelines/guideline-for-reporting-systematic-reviews-of-outcome-measurement-instruments-omis-prisma-cosmin-for-omis-2024/>
radiology-skills/skills/radiology-reporting/scripts/validate_prisma_routes.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-reporting/scripts/validate_quadas_currency.ps1
- Executable scriptline 1
Executable file - Network accessline 37
'10.7326/ANNALS-25-02104', '10.7326/ANNALS-25-04943', 'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/', - Network accessline 38
'10.7326/ANNALS-25-04943', 'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/', 'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/', - Network accessline 39
'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/', - Network accessline 40
'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/', - Network accessline 41
'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/resources/', - Network accessline 42
'https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-c/',
radiology-skills/skills/radiology-reporting/tests/test_guideline_version_contracts.py
- Executable scriptline 1
Executable file - Network accessline 52
self.assertIn("does not assess applicability", self.dta) self.assertIn( "https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/resources/", - Network accessline 53
self.assertIn( "https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/resources/", self.versions, - Network accessline 54
"https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-3/resources/", - Network accessline 56
) self.assertIn( "https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-c/", - Network accessline 57
self.assertIn( "https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-c/", self.versions, - Network accessline 58
"https://www.bristol.ac.uk/population-health-sciences/projects/quadas/quadas-c/",
radiology-skills/skills/radiology-reproducibility/references/source-registry.md
- Network accessline 7
| Claim-use | URL | Version / status on access | Accessed | |---|---|---|---| | distinguish computational reproducibility using the same data/code/conditions from replication with new data | https://nap.nationalacademies.org/catalog/25303/r - Network accessline 8
|---|---|---|---| | distinguish computational reproducibility using the same data/code/conditions from replication with new data | https://nap.nationalacademies.org/catalog/25303/reproducibility-and-replicability-in-science | US National Ac - Network accessline 9
| distinguish computational reproducibility using the same data/code/conditions from replication with new data | https://nap.nationalacademies.org/catalog/25303/reproducibility-and-replicability-in-science | US National Academies consensus - Network accessline 10
| scientific rigor and transparent, reproducible biomedical methods | https://www.grants.nih.gov/policy-and-compliance/policy-topics/reproducibility | current NIH grants policy/resource hub available; requirements depend on activity and cur - Network accessline 11
| software sharing, metadata, licence and links among code/publication/data/funding | https://datascience.nih.gov/tools-and-analytics/best-practices-for-sharing-research-software-faq | official NIH best-practices FAQ available; recommendati - Network accessline 12
| findable, accessible, interoperable and reusable research software with versioned identifiers/metadata | https://www.rd-alliance.org/groups/fair-research-software-fair4rs-wg/outputs/?output=94498 | RDA-endorsed FAIR4RS Principles v1.0, 20 - Network accessline 13
| interoperable entity-activity-agent provenance representation | https://www.w3.org/TR/prov-o/ | W3C Recommendation 2013-04-30, latest published URL; a vocabulary, not evidence that provenance is complete | 2026-08-23 | - Network accessline 14
| content-addressable container image manifests/descriptors and digest identity | https://specs.opencontainers.org/image-spec/ | OCI Image Specification standards-track page shown published 2025-11; pin applicable version/digest live | 2026 - Network accessline 15
| persistent repository release identifiers and version DOI archiving | https://docs.github.com/en/repositories/archiving-a-github-repository/referencing-and-citing-content | current GitHub documentation states Zenodo can archive releases a - Network accessline 16
| data management/sharing foundations and justified controlled access | https://grants.nih.gov/grants/guide/notice-files/not-od-21-013.html | final NIH DMS Policy effective 2023; applicability and current plan format require live verificati - Network accessline 17
| FAIR does not require unrestricted openness | https://www.go-fair.org/resources/faq/what-fair-is-not/ | official GO FAIR clarification available; controlled-access artifacts can remain FAIR with explicit access conditions | 2026-08-23 | - Network accessline 18
| radiology-AI reporting fields for data, model, evaluation and availability | https://doi.org/10.1148/ryai.240300 | primary CLAIM 2024 update; reporting completeness does not prove computational replay or clinical validity | 2026-08-23 | - Network accessline 19
| standardised radiomics feature definitions and reference values | https://doi.org/10.1148/radiol.2020191145 | primary IBSI reference publication, 2020; feature conformance does not validate the full acquisition-to-claim workflow | 2026-08 - Network accessline 20
| current DICOM standard discovery for imaging object/provenance fields | https://www.dicomstandard.org/current/ | official current-standard index; exact edition/part/section and local conformance must be frozen live | 2026-08-23 |
radiology-skills/skills/radiology-reproducibility/scripts/validate_reproducibility_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 101
$sourceUrls = @( 'https://nap.nationalacademies.org/catalog/25303/reproducibility-and-replicability-in-science', - Network accessline 102
'https://nap.nationalacademies.org/catalog/25303/reproducibility-and-replicability-in-science', - Network accessline 103
'https://www.grants.nih.gov/policy-and-compliance/policy-topics/reproducibility', - Network accessline 104
'https://datascience.nih.gov/tools-and-analytics/best-practices-for-sharing-research-software-faq', - Network accessline 105
'https://www.rd-alliance.org/groups/fair-research-software-fair4rs-wg/outputs/?output=94498', - Network accessline 106
'https://www.w3.org/TR/prov-o/', - Network accessline 107
'https://specs.opencontainers.org/image-spec/', - Network accessline 108
'https://docs.github.com/en/repositories/archiving-a-github-repository/referencing-and-citing-content', - Network accessline 109
'https://grants.nih.gov/grants/guide/notice-files/not-od-21-013.html', - Network accessline 110
'https://www.go-fair.org/resources/faq/what-fair-is-not/', - Network accessline 111
'https://doi.org/10.1148/ryai.240300', - Network accessline 112
'https://doi.org/10.1148/radiol.2020191145', - Network accessline 113
'https://www.dicomstandard.org/current/'
radiology-skills/skills/radiology-research-integrity/references/source-registry.md
- Network accessline 6
| Authority/source | URL | Version/status | Accessed | Claim use | |---|---|---|---|---| | US Office of Research Integrity, Definition of Research Misconduct | https://ori.hhs.gov/definition-research-misconduct | official web definition; ju - Network accessline 7
|---|---|---|---|---| | US Office of Research Integrity, Definition of Research Misconduct | https://ori.hhs.gov/definition-research-misconduct | official web definition; jurisdiction-specific | 2026-08-23 | fabrication, falsification and p - Network accessline 8
| US Office of Research Integrity, Definition of Research Misconduct | https://ori.hhs.gov/definition-research-misconduct | official web definition; jurisdiction-specific | 2026-08-23 | fabrication, falsification and plagiarism definition; - Network accessline 9
| US ORI, Federal Research Misconduct Policy | https://ori.hhs.gov/federal-research-misconduct-policy | official policy page; jurisdiction-specific | 2026-08-23 | allegation, inquiry, investigation and adjudication are distinct stages handl - Network accessline 10
| ICMJE Recommendations | https://www.icmje.org/recommendations/ | official recommendations; updated January 2026 | 2026-08-23 | authorship accountability, disclosures, corrections, overlapping publication and AI-use principles | - Network accessline 11
| ICMJE, Defining Authors and Contributors | https://www.icmje.org/recommendations/browse/roles-and-responsibilities/defining-the-role-of-authors-and-contributors.html | official live page | 2026-08-23 | four authorship criteria, non-author - Network accessline 12
| ICMJE, Conflicts of Interest | https://www.icmje.org/recommendations/browse/roles-and-responsibilities/author-responsibilities--conflicts-of-interest.html | official live page | 2026-08-23 | relationship/activity disclosure and sponsor-ro - Network accessline 13
| ANSI/NISO Z39.104-2022 CRediT | https://www.niso.org/publications/z39104-2022-credit | ANSI/NISO standard, published 2022 | 2026-08-23 | fourteen contribution roles; contributorship does not itself settle authorship | - Network accessline 14
| COPE Retraction Guidelines | https://doi.org/10.24318/cope.2019.1.4 | COPE Council version 2, November 2019 | 2026-08-23 | publisher-facing correction/retraction considerations and factual notices | - Network accessline 15
| COPE Authorship discussion document | https://doi.org/10.24318/cope.2019.3.3 | COPE Council version 2, September 2019 | 2026-08-23 | authorship dispute and contributorship framing | - Network accessline 16
| Crossref Crossmark documentation | https://www.crossref.org/documentation/crossmark/ | official living documentation | 2026-08-23 | corroborating publication-update metadata and links; absence of a notice is not a clean certificate |
radiology-skills/skills/radiology-research-integrity/scripts/validate_research_integrity_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 62
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$sourceUrls = @( 'https://ori.hhs.gov/definition-research-misconduct', 'https://ori.hhs.gov/federal-research-misconduct-policy', - Network accessline 64
'https://ori.hhs.gov/definition-research-misconduct', - Network accessline 65
'https://ori.hhs.gov/federal-research-misconduct-policy', - Network accessline 66
'https://www.icmje.org/recommendations/', - Network accessline 67
'https://www.icmje.org/recommendations/browse/roles-and-responsibilities/defining-the-role-of-authors-and-contributors.html', - Network accessline 68
'https://www.icmje.org/recommendations/browse/roles-and-responsibilities/author-responsibilities--conflicts-of-interest.html', - Network accessline 69
'https://www.niso.org/publications/z39104-2022-credit', - Network accessline 70
'https://doi.org/10.24318/cope.2019.1.4', - Network accessline 71
'https://doi.org/10.24318/cope.2019.3.3', - Network accessline 72
'https://www.crossref.org/documentation/crossmark/'
radiology-skills/skills/radiology-research-ops/references/source-registry.md
- Network accessline 7
| Authority/source | URL | Version/status | Accessed | Claim use | |---|---|---|---|---| | FDA, ICH E6(R3) Good Clinical Practice | https://www.fda.gov/regulatory-information/search-fda-guidance-documents/e6r3-good-clinical-practice-gcp | f - Network accessline 8
|---|---|---|---|---| | FDA, ICH E6(R3) Good Clinical Practice | https://www.fda.gov/regulatory-information/search-fda-guidance-documents/e6r3-good-clinical-practice-gcp | final FDA guidance, September 2025 | 2026-08-23 | quality by design, - Network accessline 9
| FDA, ICH E6(R3) Good Clinical Practice | https://www.fda.gov/regulatory-information/search-fda-guidance-documents/e6r3-good-clinical-practice-gcp | final FDA guidance, September 2025 | 2026-08-23 | quality by design, risk-proportionate ov - Network accessline 10
| EMA, ICH E6(R3) Step 5 PDF | https://www.ema.europa.eu/en/documents/scientific-guideline/ich-e6-r3-guideline-good-clinical-practice-gcp-step-5_en.pdf | adopted scientific guideline | 2026-08-23 | critical-to-quality factors, participant p - Network accessline 11
| SPIRIT 2025 statement | https://www.bmj.com/content/389/bmj-2024-081477 | peer-reviewed primary statement, BMJ 2025;389:e081477 | 2026-08-23 | protocol administration, roles, schedule, monitoring, amendments and open-science handoff; repo - Network accessline 12
| NIH NCCIH Clinical Research Toolbox | https://www.nccih.nih.gov/grants/toolbox | official current toolbox | 2026-08-23 | manuals of operations, delegation, training, site/enrolment, deviation, quality and closeout artifacts | - Network accessline 13
| NIH NIDCR Accrual and Retention Monitoring | https://www.nidcr.nih.gov/research/conducting-nidcr-clinical-research/nidcr-accrual-retention-monitoring | official institute guidance | 2026-08-23 | prespecified accrual/retention goals, monit - Network accessline 14
| NIH Policy for Data and Safety Monitoring | https://grants.nih.gov/grants/guide/notice-files/not98-084.html | official NIH policy, 10 June 1998 | 2026-08-23 | risk-proportionate monitoring and distinction from IRB approval for applicable - Network accessline 15
| NIH Data Management and Sharing Policy overview | https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/policy-overview | final policy effective 25 January 2023; official overview | 2026-08-23 | planned data - Network accessline 16
| NIH NIMH Clinical Research Toolbox | https://www.nimh.nih.gov/funding/clinical-research/clinical-research-toolbox/nimh-clinical-research-toolbox | official current toolbox | 2026-08-23 | study organization, operations, training, delegatio
radiology-skills/skills/radiology-research-ops/scripts/validate_research_ops_skill.ps1
- Executable scriptline 1
Executable file - Network accessline 65
$sourceText = Get-Content -LiteralPath (Join-Path $skillRoot 'references/source-registry.md') -Raw $sourceUrls = @( 'https://www.fda.gov/regulatory-information/search-fda-guidance-documents/e6r3-good-clinical-practice-gcp', - Network accessline 66
$sourceUrls = @( 'https://www.fda.gov/regulatory-information/search-fda-guidance-documents/e6r3-good-clinical-practice-gcp', 'https://www.ema.europa.eu/en/documents/scientific-guideline/ich-e6-r3-guideline-good-clinical-practice-gcp - Network accessline 67
'https://www.fda.gov/regulatory-information/search-fda-guidance-documents/e6r3-good-clinical-practice-gcp', - Network accessline 68
'https://www.ema.europa.eu/en/documents/scientific-guideline/ich-e6-r3-guideline-good-clinical-practice-gcp-step-5_en.pdf', - Network accessline 69
'https://www.bmj.com/content/389/bmj-2024-081477', - Network accessline 70
'https://www.nccih.nih.gov/grants/toolbox', - Network accessline 71
'https://www.nidcr.nih.gov/research/conducting-nidcr-clinical-research/nidcr-accrual-retention-monitoring', - Network accessline 72
'https://grants.nih.gov/grants/guide/notice-files/not98-084.html', - Network accessline 73
'https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/policy-overview', - Network accessline 74
'https://www.nimh.nih.gov/funding/clinical-research/clinical-research-toolbox/nimh-clinical-research-toolbox'
radiology-skills/skills/radiology-response/SKILL.md
- Network accessline 160
a point-by-point rebuttal and may permit or require revised material. For example, Nature currently allows an appeal rebuttal that addresses referee and/or editor comments point by point in its [initial-submission guidance](https://www.natu - Network accessline 161
allows an appeal rebuttal that addresses referee and/or editor comments point by point in its [initial-submission guidance](https://www.nature.com/nature/for-authors/initial-submission). Appeal only when the decision rests on contestable gr - Network accessline 162
[initial-submission guidance](https://www.nature.com/nature/for-authors/initial-submission). Appeal
radiology-skills/skills/radiology-response/references/reject-decision-tree.md
- Network accessline 5
**one chosen route plus the package that route and journal require**. Do not assume that an appeal excludes point-by-point rebuttal: Nature's current [appeal guidance](https://www.nature.com/nature/for-authors/initial-submission) permits a - Network accessline 6
excludes point-by-point rebuttal: Nature's current [appeal guidance](https://www.nature.com/nature/for-authors/initial-submission) permits a rebuttal letter addressing referees and/or editors point by point, whereas a desk-reject appeal wit - Network accessline 7
[appeal guidance](https://www.nature.com/nature/for-authors/initial-submission) permits a rebuttal
radiology-skills/skills/radiology-response/references/transparent-peer-review-response-map-2024-2026.tsv
- Network accessline 1
record_id doi journal publication_date primary_stratum post_publication_status request_class concern_codes concern_ontology_version canonical_concern_families governing_criterion decisive_concern author_action closure_evidence closure_statu - Network accessline 2
TPR001 10.1038/s41586-025-09079-8 Nature 2025-06-11 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as - Network accessline 3
TPR002 10.1038/s41586-024-08169-3 Nature 2024-11-13 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction rec - Network accessline 4
TPR003 10.1038/s41586-024-08260-9 Nature 2024-11-27 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as - Network accessline 5
TPR004 10.1038/s41586-025-09250-1 Nature 2025-07-16 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as - Network accessline 6
TPR005 10.1038/s41586-025-09850-x Nature 2025-11-11 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as - Network accessline 7
TPR006 10.1038/s41586-026-10181-8 Nature 2026-03-04 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as - Network accessline 8
TPR007 10.1038/s41591-025-04060-4 Nature Medicine 2026-01-05 imaging-mechanism NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked corre - Network accessline 9
TPR008 10.1038/s41591-026-04253-5 Nature Medicine 2026-03-24 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 10
TPR009 10.1038/s41551-024-01246-y Nature Biomedical Engineering 2024-08-26 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 11
TPR010 10.1038/s41551-024-01283-7 Nature Biomedical Engineering 2024-12-05 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 12
TPR011 10.1038/s41551-025-01421-9 Nature Biomedical Engineering 2025-06-16 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata an - Network accessline 13
TPR012 10.1038/s41551-025-01456-y Nature Biomedical Engineering 2025-07-14 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 14
TPR013 10.1038/s41551-025-01468-8 Nature Biomedical Engineering 2025-08-11 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 15
TPR014 10.1038/s41551-025-01578-3 Nature Biomedical Engineering 2026-01-15 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 16
TPR015 10.1038/s41551-025-01599-y Nature Biomedical Engineering 2026-02-12 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 17
TPR016 10.1038/s41551-025-01608-0 Nature Biomedical Engineering 2026-02-06 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 18
TPR017 10.1038/s41551-026-01637-3 Nature Biomedical Engineering 2026-03-25 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 19
TPR018 10.1038/s41551-026-01740-5 Nature Biomedical Engineering 2026-07-13 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 20
TPR019 10.1038/s41551-026-01741-4 Nature Biomedical Engineering 2026-07-22 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linke - Network accessline 21
TPR020 10.1038/s41592-025-02707-1 Nature Methods 2025-05-29 imaging-mechanism NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 22
TPR021 10.1038/s41467-025-62042-z Nature Communications 2025-08-01 radiomics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correct - Network accessline 23
TPR022 10.1038/s41467-025-58344-x Nature Communications 2025-04-01 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 24
TPR023 10.1038/s41467-025-59694-2 Nature Communications 2025-06-12 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 25
TPR024 10.1038/s41467-025-58798-z Nature Communications 2025-04-17 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 26
TPR025 10.1038/s41467-025-57541-y Nature Communications 2025-03-08 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 27
TPR026 10.1038/s41467-025-66071-6 Nature Communications 2025-12-11 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 28
TPR027 10.1038/s41467-025-66220-x Nature Communications 2025-12-12 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 29
TPR028 10.1038/s41467-025-66620-z Nature Communications 2025-12-03 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 30
TPR029 10.1038/s41467-025-66889-0 Nature Communications 2025-12-03 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 31
TPR030 10.1038/s41467-025-66961-9 Nature Communications 2025-12-31 imaging-mechanism NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 32
TPR031 10.1038/s41467-025-66593-z Nature Communications 2025-11-23 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 33
TPR032 10.1038/s41467-026-68292-9 Nature Communications 2026-01-15 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 34
TPR033 10.1038/s41467-026-68414-3 Nature Communications 2026-02-11 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 35
TPR034 10.1038/s41467-026-69295-2 Nature Communications 2026-02-09 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 36
TPR035 10.1038/s41467-026-72680-6 Nature Communications 2026-05-07 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 37
TPR036 10.1038/s41467-026-73088-y Nature Communications 2026-05-20 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 38
TPR037 10.1038/s41467-026-73370-z Nature Communications 2026-07-22 imaging-mechanism NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 39
TPR038 10.1038/s41467-026-73813-7 Nature Communications 2026-05-28 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 40
TPR039 10.1038/s41467-026-73923-2 Nature Communications 2026-06-11 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 41
TPR040 10.1038/s41467-026-74175-w Nature Communications 2026-06-08 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 42
TPR041 10.1038/s41467-026-74708-3 Nature Communications 2026-07-01 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 43
TPR042 10.1038/s41467-026-74985-y Nature Communications 2026-07-10 imaging-mechanism NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 44
TPR043 10.1038/s41467-026-75692-4 Nature Communications 2026-07-21 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 45
TPR044 10.1038/s41467-026-76004-6 Nature Communications 2026-07-24 digital-pathology NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 46
TPR045 10.1038/s41467-026-73022-2 Nature Communications 2026-05-21 imaging-ai NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correc - Network accessline 47
TPR046 10.1038/s41586-025-09478-x Nature 2025-09-03 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as of - Network accessline 48
TPR047 10.1038/s41586-025-09020-z Nature 2025-05-21 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as of - Network accessline 49
TPR048 10.1038/s41586-025-08838-x Nature 2025-04-09 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as of - Network accessline 50
TPR049 10.1038/s41586-024-08334-8 Nature 2024-12-18 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as of - Network accessline 51
TPR050 10.1038/s41586-024-07944-6 Nature 2024-11-20 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records as of - Network accessline 52
TPR051 10.1038/s41586-024-07946-4 Nature 2024-09-25 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction records a - Network accessline 53
TPR052 10.1038/s41588-026-02615-w Nature Genetics 2026-06-09 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 54
TPR053 10.1038/s41588-026-02573-3 Nature Genetics 2026-04-24 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 55
TPR054 10.1038/s41588-026-02552-8 Nature Genetics 2026-03-23 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 56
TPR055 10.1038/s41588-025-02454-1 Nature Genetics 2026-01-23 single-cell CORRECTION as screened 2026-08-22: Nature records an Author Correction published 18 February 2026 (DOI 10.1038/s41588-026-02545-7): Jongsu Choi had been omitted from t - Network accessline 57
TPR056 10.1038/s41588-025-02407-8 Nature Genetics 2025-11-24 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 58
TPR057 10.1038/s41588-025-02344-6 Nature Genetics 2025-10-20 perturbation NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 59
TPR058 10.1038/s41588-025-02351-7 Nature Genetics 2025-10-10 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 60
TPR059 10.1038/s41588-025-02253-8 Nature Genetics 2025-07-21 spatial EDITOR_NOTE as screened 2026-08-22: 25 May 2026 Editor's Note: readers were alerted that concerns had been raised about the reliability of data in the article; Nature stat - Network accessline 61
TPR060 10.1038/s41588-025-02193-3 Nature Genetics 2025-06-05 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 62
TPR061 10.1038/s41588-025-02083-8 Nature Genetics 2025-02-17 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 63
TPR062 10.1038/s41588-024-02036-7 Nature Genetics 2025-01-08 single-cell NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 64
TPR063 10.1038/s41588-024-01997-z Nature Genetics 2025-01-02 single-cell NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 65
TPR064 10.1038/s41588-024-02019-8 Nature Genetics 2024-12-03 single-cell NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 66
TPR065 10.1038/s41588-024-01999-x Nature Genetics 2024-11-25 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 67
TPR066 10.1038/s41588-024-01961-x Nature Genetics 2024-11-22 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction reco - Network accessline 68
TPR067 10.1038/s41592-026-03089-8 Nature Methods 2026-04-30 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 69
TPR068 10.1038/s41592-026-03034-9 Nature Methods 2026-03-27 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 70
TPR069 10.1038/s41592-025-02968-w Nature Methods 2025-12-18 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 71
TPR070 10.1038/s41592-025-02980-0 Nature Methods 2025-12-11 perturbation NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction - Network accessline 72
TPR071 10.1038/s41592-025-02899-6 Nature Methods 2025-12-10 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 73
TPR072 10.1038/s41592-025-02855-4 Nature Methods 2025-11-03 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 74
TPR073 10.1038/s41592-025-02814-z Nature Methods 2025-10-30 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 75
TPR074 10.1038/s41592-025-02870-5 Nature Methods 2025-10-23 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 76
TPR075 10.1038/s41592-025-02854-5 Nature Methods 2025-10-22 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 77
TPR076 10.1038/s41592-025-02856-3 Nature Methods 2025-10-13 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 78
TPR077 10.1038/s41592-025-02773-5 Nature Methods 2025-09-15 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 79
TPR078 10.1038/s41592-025-02713-3 Nature Methods 2025-06-06 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 80
TPR079 10.1038/s41592-025-02651-0 Nature Methods 2025-04-17 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 81
TPR080 10.1038/s41592-025-02622-5 Nature Methods 2025-03-12 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 82
TPR081 10.1038/s41592-024-02576-0 Nature Methods 2025-01-27 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 83
TPR082 10.1038/s41592-024-02567-1 Nature Methods 2025-01-16 single-cell NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 84
TPR083 10.1038/s41592-024-02574-2 Nature Methods 2025-01-15 spatial CORRECTION as screened 2026-08-22: Nature records two Author Corrections: DOI 10.1038/s41592-025-02600-x (24 January 2025) added inadvertently omitted Data availability and - Network accessline 85
TPR084 10.1038/s41592-024-02429-w Nature Methods 2024-09-25 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 86
TPR085 10.1038/s41592-024-02380-w Nature Methods 2024-08-26 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 87
TPR086 10.1038/s41467-026-69856-5 Nature Communications 2026-03-18 perturbation NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked corr - Network accessline 88
TPR087 10.1038/s41467-026-69677-6 Nature Communications 2026-02-21 perturbation NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked corr - Network accessline 89
TPR088 10.1038/s41467-025-66162-4 Nature Communications 2025-12-10 bulk-rna NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correcti - Network accessline 90
TPR089 10.1038/s41467-025-60028-5 Nature Communications 2025-05-30 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 91
TPR090 10.1038/s41467-025-56473-x Nature Communications 2025-03-10 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 92
TPR091 10.1038/s41467-025-56523-4 Nature Communications 2025-02-01 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 93
TPR092 10.1038/s41467-024-54438-0 Nature Communications 2024-11-21 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 94
TPR093 10.1038/s41467-024-51767-y Nature Communications 2024-09-06 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 95
TPR094 10.1038/s41467-024-52153-4 Nature Communications 2024-09-04 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 96
TPR095 10.1038/s41467-025-55847-5 Nature Communications 2025-01-12 imaging-mechanism NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked - Network accessline 97
TPR096 10.1038/s41467-025-56623-1 Nature Communications 2025-02-01 multi-omics NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked corre - Network accessline 98
TPR097 10.1038/s41592-025-02624-3 Nature Methods 2025-03-13 single-cell NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction r - Network accessline 99
TPR098 10.1038/s41592-024-02415-2 Nature Methods 2024-09-12 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correction recor - Network accessline 100
TPR099 10.1038/s41467-024-50904-x Nature Communications 2024-08-23 spatial NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked correctio - Network accessline 101
TPR100 10.1038/s41467-025-61149-7 Nature Communications 2025-07-01 single-cell NO_NOTICE_SIGNAL_FOUND as screened 2026-08-22: No targeted post-publication notice signal was found in the checked official page/status metadata and linked corre
radiology-skills/skills/radiology-response/scripts/audit_response_evidence_map.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-response/scripts/test_response_package_receipt.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-response/scripts/validate_response_package_receipt.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-response/scripts/validate_response_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-search/SKILL.md
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[Credential-related source omitted]
radiology-skills/skills/radiology-search/references/retrieval-run-receipt.md
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- NCBI. [E-utilities usage guidelines](https://www.ncbi.nlm.nih.gov/books/NBK25497/). - Network accessline 63
- Crossref. [REST API documentation](https://www.crossref.org/documentation/retrieve-metadata/rest-api/). - Network accessline 64
- Future-House. [PaperQA2](https://github.com/Future-House/paper-qa), used here only as an
radiology-skills/skills/radiology-search/scripts/validate_retrieval_run_receipt.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-search/tests/test_retrieval_run_receipt.py
- Executable scriptline 1
#!/usr/bin/env python3 - Network accessline 40
}, "sources": [{ "source_id": "PubMed", "endpoint": "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi", - Network accessline 41
"sources": [{ "source_id": "PubMed", "endpoint": "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi", "query": "radiomics[Title/Abstract]", "filters": {"language": "English"}, - Network accessline 42
"source_id": "PubMed", "endpoint": "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi",
radiology-skills/skills/radiology-stats/references/agreement-mrmc.md
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radiology-skills/skills/radiology-stats/references/causal-and-clinical-impact-inference.md
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radiology-skills/skills/radiology-stats/references/incremental-value.md
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radiology-skills/skills/radiology-stats/references/longitudinal-and-multistate-imaging.md
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radiology-skills/skills/radiology-stats/scripts/validate_stats_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-stats/tests/test_methodology_p1_contracts.py
radiology-skills/skills/radiology-submission/assets/conference-portal-intake.template.json
- Network accessline 6
"submission_cycle": "2027", "submission_type": "Scientific abstract", "current_call_url": "https://example.org/annual-meeting/abstract-submission", - Network accessline 7
"submission_type": "Scientific abstract", "current_call_url": "https://example.org/annual-meeting/abstract-submission", "portal_url": "https://submit.example.org/annual-meeting/2027", - Network accessline 8
"current_call_url": "https://example.org/annual-meeting/abstract-submission", - Network accessline 9
"portal_url": "https://submit.example.org/annual-meeting/2027",
radiology-skills/skills/radiology-submission/references/authorship-ai-and-public-access-handoff.md
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- ICMJE. [Authors and contributors](https://www.icmje.org/recommendations/browse/roles-and-responsibilities/defining-the-role-of-authors-and-contributors.html) - Network accessline 73
and [AI in publishing](https://www.icmje.org/recommendations/browse/artificial-intelligence/), - Network accessline 74
official recommendations accessed 2026-08-23. - NISO. [CRediT](https://credit.niso.org/), taxonomy/status accessed 2026-08-23. - NIH. [Public Access](https://grants.nih.gov/policy-and-compliance/policy-topics/public-access), - Network accessline 75
- NISO. [CRediT](https://credit.niso.org/), taxonomy/status accessed 2026-08-23. - Network accessline 76
- NIH. [Public Access](https://grants.nih.gov/policy-and-compliance/policy-topics/public-access), - Network accessline 77
official policy overview accessed 2026-08-23. - NIH. [Writing a DMS Plan](https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/writing-dms-plan), current DMS format route accessed 2026-08-23. - Network accessline 78
- NIH. [Writing a DMS Plan](https://www.grants.nih.gov/policy-and-compliance/policy-topics/sharing-policies/dms/writing-dms-plan),
radiology-skills/skills/radiology-submission/references/intake-transfer-and-human-review.md
- Network accessline 127
- Radiology author instructions and editorial handling: `https://pubs.rsna.org/page/radiology/author-instructions` and - Network accessline 128
`https://pubs.rsna.org/page/radiology/author-instructions` and - Network accessline 129
`https://pubs.rsna.org/page/radiology/author-instructions/your-paper`; - Network accessline 130
- Nature Portfolio transfer process: `https://www.nature.com/nature-portfolio/for-authors/transfer`; - Network accessline 131
- Wiley Refer and Transfer: `https://authors.wiley.com/author-resources/Journal-Authors/submission-peer-review/Refer_and_Transfer.html`; - Elsevier Article Transfer Service: - Network accessline 132
`https://authors.wiley.com/author-resources/Journal-Authors/submission-peer-review/Refer_and_Transfer.html`; - Network accessline 133
- Elsevier Article Transfer Service: `https://www.elsevier.com/publishing/publish-in-a-journal/submission-and-decision/article-transfer-service`; - JAMA Network Open instructions: - Network accessline 134
`https://www.elsevier.com/publishing/publish-in-a-journal/submission-and-decision/article-transfer-service`; - Network accessline 136
`https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors`.
radiology-skills/skills/radiology-submission/references/journal-requirements-evidence.tsv
- Network accessline 1
journal_id rule_id article_type stage authority_class requirement_class condition material rule_summary allowed_extensions source_url checked_on verification_status applicable_stages radiology RAD-INITIAL-MAIN Original Research initial JOUR - Network accessline 2
radiology RAD-INITIAL-MAIN Original Research initial JOURNAL_GUIDE required all submissions anonymous main manuscript One anonymous main document; text files are DOCX and DOC is no longer accepted .docx https://pubs.rsna.org/page/radiology/ - Network accessline 3
radiology RAD-INITIAL-TITLE Original Research initial JOURNAL_GUIDE required all submissions full title page Separate full title page with authorship, contacts, funding, word count and data-sharing statement .docx https://pubs.rsna.org/page - Network accessline 4
radiology RAD-INITIAL-COVER Original Research initial JOURNAL_GUIDE required all submissions cover letter content Required cover-letter content may be pasted in the portal or supplied as an optional attachment; attachment type is a live che - Network accessline 5
radiology RAD-INITIAL-FIGURES Original Research initial JOURNAL_GUIDE conditional figures are present combined figure review file All figures in one Word file one figure per page with legend .docx https://pubs.rsna.org/page/radiology/author - Network accessline 6
radiology RAD-ACK-PERM Original Research initial JOURNAL_GUIDE conditional acknowledged persons or permission-requiring material exists acknowledgment and permission forms The author guide requires a separate acknowledgment and permission f - Network accessline 7
radiology RAD-SUPP-DOC Original Research initial JOURNAL_GUIDE conditional supplemental text tables or figures exist Supplemental File for Review Supplemental text tables and figures with legends are compiled in one separate Word document . - Network accessline 8
radiology RAD-SUPP-MEDIA Original Research initial JOURNAL_GUIDE conditional supplemental movie animation or audio exists separate supplemental multimedia Movies and audio are uploaded separately; MP4 and MP3 are preferred and the guide lis - Network accessline 9
radiology RAD-REPORTING Original Research initial JOURNAL_GUIDE conditional human study design matches a named guideline reporting checklist Applicable editable STARD CONSORT PRISMA-DTA or STROBE checklist .docx https://pubs.rsna.org/page/r - Network accessline 10
radiology RAD-REVISION Original Research revision JOURNAL_GUIDE required revision invited clean and marked anonymous manuscripts Clean and marked anonymous main manuscripts are DOCX revision items .docx https://pubs.rsna.org/page/radiology/ - Network accessline 11
radiology RAD-REV-RESPONSE Original Research revision JOURNAL_GUIDE required revision invited point-by-point response A point-by-point response is required but its accepted upload extension must be resolved from the exact Radiology revision - Network accessline 12
radiology RAD-REV-FIGURES Original Research revision JOURNAL_GUIDE conditional figures are present individual high-resolution revision figures Revision figures or panels are uploaded individually; conflicting public format lists require the - Network accessline 13
radiology RAD-EXAMPLE-1 Original Research published PUBLISHED_EXEMPLAR advisory comparable radiology AI published article Use only for observed evidence and display style https://pubs.rsna.org/doi/10.1148/radiol.240885 2026-08-22 OBSERVED_ - Network accessline 14
nature-medicine NM-INITIAL-MAIN Article initial JOURNAL_GUIDE required all submissions manuscript Flexible initial manuscript accepts PDF Word or compiled TeX/LaTeX PDF .pdf;.doc;.docx https://www.nature.com/nm/submission-guidelines/initial - Network accessline 15
nature-medicine NM-COVER Article initial JOURNAL_GUIDE required all submissions cover letter Cover explains significance fit related manuscripts and prior editor contact https://www.nature.com/nm/submission-guidelines/preparing-your-submis - Network accessline 16
nature-medicine NM-LIMITS Article initial JOURNAL_GUIDE required Article manuscript content Abstract 150 words; main text 4000; six main display items; ten Extended Data https://www.nature.com/nm/content 2026-08-22 VERIFIED_CURRENT initial - Network accessline 17
nature-medicine NM-REPORTING Article pre-review JOURNAL_GUIDE conditional relevant life-science or clinical research Reporting Summary Applicable manuscripts entering review provide current Reporting Summary .pdf;.docx https://www.nature.co - Network accessline 18
nature-medicine NM-MICLAIM Article initial JOURNAL_GUIDE conditional medical AI study MI-CLAIM-GEN checklist Nature Medicine clinical-AI policy requires adherence and checklist .pdf;.docx https://www.nature.com/nm/editorial-policies/clinica - Network accessline 19
nature-medicine NM-FINAL-SOURCE Article final-files JOURNAL_GUIDE required accepted final editable manuscript source Final production source is Word or TeX/LaTeX; PDF alone is insufficient .docx;.tex https://www.nature.com/nm/submission-gui - Network accessline 20
nature-medicine NM-REV-CLEAN-MARKED Article revision JOURNAL_GUIDE conditional revision invited clean and marked pair Universal clean plus marked pairing was not established on public guide https://www.nature.com/nm/submission-guidelines/e - Network accessline 21
nature-medicine NM-EXAMPLE-1 Article published PUBLISHED_EXEMPLAR advisory comparable imaging AI published article Attachment and house-style observation only https://www.nature.com/articles/s41591-024-03408-6 2026-08-22 OBSERVED_ONLY publ - Network accessline 22
nature-communications NCOM-INITIAL-MAIN Article initial JOURNAL_GUIDE required all submissions combined manuscript Initial text and figures may be combined in Word TeX or PDF up to 30 MB .doc;.docx;.tex;.pdf https://www.nature.com/ncomms/su - Network accessline 23
nature-communications NCOM-COVER Article initial JOURNAL_GUIDE required all submissions cover letter Cover includes corresponding contact significance fit and reviewer suggestions https://www.nature.com/ncomms/submit/how-to-submit 2026-08- - Network accessline 24
nature-communications NCOM-SI Article initial JOURNAL_GUIDE conditional supplementary content exists Supplementary Information Separate SI; Word preferred; per-file and total size limits apply .doc;.docx;.pdf;.xls;.xlsx;.csv;.zip;.ppt;.pptx - Network accessline 25
nature-communications NCOM-RELATED Article initial JOURNAL_GUIDE conditional related manuscript with overlapping authors is under consideration or in press related manuscript copy Copies of related manuscripts under consideration or in pres - Network accessline 26
nature-communications NCOM-LIMITS Article initial JOURNAL_GUIDE required Article manuscript content Title 15 words; abstract 200; ten display items; suggested main text 5000 https://www.nature.com/ncomms/submit/article 2026-08-22 VERIFIED_ - Network accessline 27
nature-communications NCOM-REPORTING Article pre-review JOURNAL_GUIDE conditional relevant research Reporting Summary Relevant manuscripts entering review provide Reporting Summary .pdf;.docx https://www.nature.com/ncomms/editorial-policies - Network accessline 28
nature-communications NCOM-REV-RESPONSE Article revision JOURNAL_GUIDE required revision invited point-by-point response A separate point-by-point response accompanies the revised manuscript; accepted upload extension is an exact revision-p - Network accessline 29
nature-communications NCOM-EXAMPLE-1 Article published PUBLISHED_EXEMPLAR advisory comparable multimodal radiology AI published article Published layout and attachments are observation only https://www.nature.com/articles/s41467-025-57426- - Network accessline 30
lancet-digital-health TLDH-MAIN Article initial JOURNAL_GUIDE required all submissions manuscript with tables and panels Main manuscript is required; public PDF does not state accepted extension https://www.thelancet.com/pb-assets/Lancet/a - Network accessline 31
lancet-digital-health TLDH-COVER Article initial JOURNAL_GUIDE portal-only all submissions covering letter Covering letter content is entered via Enter Comments rather than inferred as a file https://www.thelancet.com/pb-assets/Lancet/auth - Network accessline 32
lancet-digital-health TLDH-RIC Article initial JOURNAL_GUIDE required primary research Research in context Three prescribed unreferenced evidence sections https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-authors.pdf 2026-08 - Network accessline 33
lancet-digital-health TLDH-LIMITS Article initial JOURNAL_GUIDE required Article manuscript content Main text 3500 or RCT 4500; 30 references; five-part abstract 300 https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-authors. - Network accessline 34
lancet-digital-health TLDH-AUTHOR-FORM Article initial JOURNAL_GUIDE conditional Original Research author statement form Guide contains conflicting upload timing; live portal must resolve .pdf https://www.thelancet.com/pb-assets/Lancet/auth - Network accessline 35
lancet-digital-health TLDH-REVISION Article revision JOURNAL_GUIDE required revision invited clean highlighted and response files Clean and highlighted manuscripts plus detailed response https://www.thelancet.com/pb-assets/Lancet/authors/t - Network accessline 36
lancet-digital-health TLDH-EXAMPLE-1 Article published PUBLISHED_EXEMPLAR advisory comparable imaging AI published article Structure and display observation only https://www.sciencedirect.com/science/article/pii/S2589750024002498 2026-08-2 - Network accessline 37
eclinicalmedicine ECM-MAIN Article initial JOURNAL_GUIDE required all submissions manuscript with tables and panels Main manuscript required; accepted extension not stated in public PDF https://www.thelancet.com/pb-assets/Lancet/authors/ec - Network accessline 38
eclinicalmedicine ECM-COVER Article initial JOURNAL_GUIDE portal-only all submissions covering letter Covering letter content is entered via Enter Comments rather than inferred as a file https://www.thelancet.com/pb-assets/Lancet/authors/e - Network accessline 39
eclinicalmedicine ECM-AUTHOR-FORM Article initial JOURNAL_GUIDE required all article types signed author statement form Current journal PDF places signed form at initial submission .pdf https://www.thelancet.com/pb-assets/Lancet/authors/ecm - Network accessline 40
eclinicalmedicine ECM-RIC Article initial JOURNAL_GUIDE required primary research Research in context Three unreferenced evidence sections https://www.thelancet.com/pb-assets/Lancet/authors/ecm-info-for-authors.pdf 2026-08-22 VERIFIED_CURR - Network accessline 41
eclinicalmedicine ECM-LIMITS Article initial JOURNAL_GUIDE required Article manuscript content Main text approximately 3500 to 5000; 30 references; abstract about 250 https://www.thelancet.com/pb-assets/Lancet/authors/ecm-info-for-authors. - Network accessline 42
eclinicalmedicine ECM-EPD Article revision JOURNAL_GUIDE conditional relevant LMIC research Equitable Partnership Declaration Requested at revision for applicable research not universal initial upload .pdf;.docx https://www.thelancet.com/pb - Network accessline 43
eclinicalmedicine ECM-REVISION Article revision JOURNAL_GUIDE required revision invited clean highlighted and response files Clean and highlighted manuscripts plus detailed response https://www.thelancet.com/pb-assets/Lancet/authors/ecm-in - Network accessline 44
eclinicalmedicine ECM-EXAMPLE-1 Article published PUBLISHED_EXEMPLAR advisory comparable radiomics AI published article Published layout is observation only https://www.sciencedirect.com/science/article/pii/S258953702500118X 2026-08-22 OBS - Network accessline 45
cancer-cell CC-INITIAL-MAIN Research Article initial JOURNAL_GUIDE required all submissions free-format manuscript One PDF or Word plus separate files; LaTeX compiled PDF; initial total at most 20 MB .pdf;.doc;.docx https://www.cell.com/can - Network accessline 46
cancer-cell CC-COVER Research Article initial JOURNAL_GUIDE required all submissions cover letter Editor-only cover describing advance significance and related work https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript - Network accessline 47
cancer-cell CC-DOI Research Article initial JOURNAL_GUIDE required all submissions Declaration of Interests Completed DOI PDF is an initial item .pdf https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript 2026-08-22 VERI - Network accessline 48
cancer-cell CC-LIMITS Research Article initial JOURNAL_GUIDE required Research Article manuscript content Main text 7000 words; figures plus tables eight https://www.cell.com/cancer-cell/information-for-authors/article-types 2026-08-22 VER - Network accessline 49
cancer-cell CC-STAR Research Article revision JOURNAL_GUIDE required revision invited or final package STAR Methods STAR Methods becomes a revision/final requirement not a universal initial item .docx;.tex https://www.cell.com/cancer-cell/i - Network accessline 50
cancer-cell CC-KRT Research Article revision JOURNAL_GUIDE conditional study uses biological materials models reagents software datasets or other key resources Key Resources Table Current STAR Methods/template requires the applicable Key Re - Network accessline 51
cancer-cell CC-GA Research Article final-files JOURNAL_GUIDE required final package graphical abstract Graphical abstract 1200 square pixels 300 dpi in listed formats .tif;.tiff;.pdf;.jpg;.jpeg https://www.cell.com/cancer-cell/information-f - Network accessline 52
cancer-cell CC-HIGHLIGHTS Research Article final-files JOURNAL_GUIDE required final package Highlights and eTOC One Word file with up to four Highlights and eTOC .docx https://www.cell.com/cancer-cell/information-for-authors/final-submissio - Network accessline 53
cancer-cell CC-FINAL-FIGURES Research Article final-files JOURNAL_GUIDE conditional main figures exist separate final main figures Final figures are uploaded separately in accepted high-resolution formats and each file is at most 20 MB .tif - Network accessline 54
cancer-cell CC-EXAMPLE-1 Research Article published PUBLISHED_EXEMPLAR advisory comparable single-cell spatial study published article Published organization and attachments are observation only https://www.sciencedirect.com/science/articl - Network accessline 55
cell-reports-medicine CRM-INITIAL-MAIN Research article initial JOURNAL_GUIDE required all submissions free-format manuscript One PDF or Word plus files; LaTeX compiled PDF; initial total at most 20 MB .pdf;.doc;.docx https://www.cell.com/c - Network accessline 56
cell-reports-medicine CRM-COVER Research article initial JOURNAL_GUIDE required all submissions cover letter Editor-only cover letter is an initial item https://www.cell.com/cell-reports-medicine/information-for-authors/submit-manuscript 2 - Network accessline 57
cell-reports-medicine CRM-DOI Research article initial JOURNAL_GUIDE required all submissions Declaration of Interests Completed DOI PDF is an initial item .pdf https://www.cell.com/cell-reports-medicine/information-for-authors/submit-manus - Network accessline 58
cell-reports-medicine CRM-TRIAL Research article initial JOURNAL_GUIDE conditional clinical trial protocol amendments and SAP Trial materials are supplied for reviewer assessment .pdf;.docx https://www.cell.com/cell-reports-medicine/informa - Network accessline 59
cell-reports-medicine CRM-LIMITS Research article initial JOURNAL_GUIDE required Research article manuscript content Main text below 7000 words; figures plus tables seven https://www.cell.com/cell-reports-medicine/information-for-authors/a - Network accessline 60
cell-reports-medicine CRM-LIMITATIONS Research article revision JOURNAL_GUIDE required revision invited or final package Limitations of the study Discussion contains the journal-specific subsection https://www.cell.com/cell-reports-medicin - Network accessline 61
cell-reports-medicine CRM-GA Research article final-files JOURNAL_GUIDE required final package graphical abstract Graphical abstract 1200 square pixels 300 dpi in listed formats .tif;.tiff;.pdf;.jpg;.jpeg https://www.cell.com/cell-reports-m - Network accessline 62
cell-reports-medicine CRM-FINAL-FIGURES Research article final-files JOURNAL_GUIDE conditional main figures exist separate final main figures Final figures are uploaded separately in accepted high-resolution formats and each file is at most - Network accessline 63
cell-reports-medicine CRM-EXAMPLE-1 Research article published PUBLISHED_EXEMPLAR advisory comparable multi-omics study published article Published presentation is observation only https://www.sciencedirect.com/science/article/pii/S2666379 - Network accessline 64
npj-digital-medicine NPJDM-MAIN Article initial JOURNAL_GUIDE required all submissions manuscript Initial PDF or Word; compiled PDF for TeX/LaTeX .pdf;.doc;.docx https://www.nature.com/npjdigitalmed/for-authors-and-referees/submisions 2026- - Network accessline 65
npj-digital-medicine NPJDM-COVER Article initial JOURNAL_GUIDE required all submissions cover letter Cover letter is part of initial package https://www.nature.com/npjdigitalmed/for-authors-and-referees/submisions 2026-08-22 VERIFIED_CURRE - Network accessline 66
npj-digital-medicine NPJDM-SI Article initial JOURNAL_GUIDE conditional supplement exists Supplementary Information One separate file; PDF preferred but not established as the exclusive accepted extension https://www.nature.com/npjdigitalm - Network accessline 67
npj-digital-medicine NPJDM-LIMITS Article initial JOURNAL_GUIDE required Article manuscript content Title 15 words; abstract 150; legend 350; no strict total word limit https://www.nature.com/npjdigitalmed/content-types 2026-08-22 VERIFIED - Network accessline 68
npj-digital-medicine NPJDM-REPORTING Article pre-review JOURNAL_GUIDE conditional relevant life-science research Reporting Summary Required before review for applicable manuscript .pdf;.docx https://www.nature.com/npjdigitalmed/for-authors- - Network accessline 69
npj-digital-medicine NPJDM-FIG-TYPE Article final-files JOURNAL_GUIDE conditional figures exist final figure extension Current journal page did not establish final figure extensions https://www.nature.com/npjdigitalmed/for-authors-and-refe - Network accessline 70
npj-digital-medicine NPJDM-EXAMPLE-1 Article published PUBLISHED_EXEMPLAR advisory medical AI published article Attachment observation only https://www.nature.com/articles/s41746-024-01118-4 2026-08-22 OBSERVED_ONLY published - Network accessline 71
npj-precision-oncology NPJPO-MAIN Article initial JOURNAL_GUIDE required all submissions manuscript Initial PDF or Word; compiled PDF for TeX/LaTeX .pdf;.doc;.docx https://www.nature.com/npjprecisiononcology/for-authors-and-referees/submisi - Network accessline 72
npj-precision-oncology NPJPO-COVER Article initial JOURNAL_GUIDE required all submissions cover letter Cover letter is part of initial package https://www.nature.com/npjprecisiononcology/for-authors-and-referees/submisions 2026-08-22 VERIF - Network accessline 73
npj-precision-oncology NPJPO-SI Article initial JOURNAL_GUIDE conditional supplement exists Supplementary Information One separate file; PDF preferred but not established as the exclusive accepted extension https://www.nature.com/npjprecis - Network accessline 74
npj-precision-oncology NPJPO-LIMITS Article initial JOURNAL_GUIDE required Article manuscript content Title 15 words; abstract 150; legend 350; no strict total word limit https://www.nature.com/npjprecisiononcology/content-types 2026-08-22 - Network accessline 75
npj-precision-oncology NPJPO-REPORTING Article pre-review JOURNAL_GUIDE conditional relevant life-science or oncology research Reporting Summary and design checklist Activate applicable reporting branch before review .pdf;.docx https://www. - Network accessline 76
npj-precision-oncology NPJPO-FIG-TYPE Article final-files JOURNAL_GUIDE conditional figures exist final figure extension Current journal page did not establish final figure extensions https://www.nature.com/npjprecisiononcology/for-authors - Network accessline 77
npj-precision-oncology NPJPO-EXAMPLE-1 Article published PUBLISHED_EXEMPLAR advisory multicentre pathology AI published article Published presentation is observation only https://www.nature.com/articles/s41698-024-00652-4 2026-08-22 OBSERV - Network accessline 78
advanced-science AS-FREE-FORM Research Article initial PUBLISHER_POLICY required new submission free-format route Official portfolio indexing indicated Free Format but the policy page body was inaccessible; refresh before relying on it htt - Network accessline 79
advanced-science AS-DATA-STATEMENT Research Article initial PUBLISHER_POLICY required research article Data Availability Statement Wiley research content includes a data availability statement https://authorservices.wiley.com/author-resour - Network accessline 80
advanced-science AS-BIO-CHECK Research Article initial PUBLISHER_POLICY conditional biological or biomedical research Biological and Biomedical Sciences Data Reporting Checklist Advanced Portfolio identifies this checklist as a submission c - Network accessline 81
advanced-science AS-ML-CHECK Research Article initial PUBLISHER_POLICY conditional machine-learning research Machine Learning Data Reporting Checklist Advanced Portfolio directs applicable ML research to the current reporting checklist .pdf - Network accessline 82
advanced-science AS-MAIN-TYPE Research Article initial JOURNAL_GUIDE required all submissions manuscript accepted extension Journal-specific guide returned 403; Free Format cannot establish file type https://advanced.onlinelibrary.wiley.co - Network accessline 83
advanced-science AS-FIG-TYPE Research Article revision JOURNAL_GUIDE conditional figures exist final figure type and resolution Journal-specific guide inaccessible; sibling rules are prohibited https://advanced.onlinelibrary.wiley.com/hub/ - Network accessline 84
advanced-science AS-PORTAL Research Article initial PORTAL_PLACEHOLDER advisory all submissions public development portal placeholder Public Editorial Manager page identifies itself as a development site and cannot establish current submiss - Network accessline 85
advanced-science AS-EXAMPLE-1 Research Article published PUBLISHED_EXEMPLAR advisory imaging and deep learning published article Published layout is observation only https://advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202307837 2026- - Network accessline 86
jama-network-open JNO-MAIN Original Investigation initial JOURNAL_GUIDE required all submissions main manuscript Single Word main file; PDF is not accepted .doc;.docx https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-a - Network accessline 87
jama-network-open JNO-COVER Original Investigation initial JOURNAL_GUIDE optional all submissions cover letter Recommended rather than universally required .docx;.pdf https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-a - Network accessline 88
jama-network-open JNO-KEY-POINTS Original Investigation initial JOURNAL_GUIDE required all submissions Key Points Question Findings Meaning in 75 to 100 words https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors - Network accessline 89
jama-network-open JNO-LIMITS Original Investigation initial JOURNAL_GUIDE required Original Investigation manuscript content Title 100 characters; abstract 350 words; main text 3000; usually five displays https://jamanetwork.com/journals/j - Network accessline 90
jama-network-open JNO-SUPP Original Investigation initial JOURNAL_GUIDE conditional supplement exists supplement One Word supplement; one Excel workbook for spreadsheet-suitable data .doc;.docx;.xls;.xlsx https://jamanetwork.com/journals/ja - Network accessline 91
jama-network-open JNO-PROTOCOL Original Investigation initial JOURNAL_GUIDE conditional randomized or nonrandomized clinical trial protocol and SAP Full protocol and SAP are supplemental trial materials .pdf;.docx https://jamanetwork.com/jo - Network accessline 92
jama-network-open JNO-INIT-FIG-GRAPH Original Investigation initial JOURNAL_GUIDE conditional main-article statistical graph or plot is supplied as a separate initial-submission file separate initial graph or plot Initial submissions may su - Network accessline 93
jama-network-open JNO-INIT-FIG-FLOW Original Investigation initial JOURNAL_GUIDE conditional main-article flow diagram is supplied as a separate initial-submission file separate initial flow diagram Initial submissions may supply figures se - Network accessline 94
jama-network-open JNO-INIT-FIG-ILLUS Original Investigation initial JOURNAL_GUIDE conditional main-article illustration is supplied as a separate initial-submission file separate initial illustration Initial submissions may supply figures s - Network accessline 95
jama-network-open JNO-INIT-FIG-PHOTO Original Investigation initial JOURNAL_GUIDE conditional photograph clinical image radiograph microscopy CT MRI or ultrasound figure is supplied as a separate initial-submission file separate initial pho - Network accessline 96
jama-network-open JNO-INIT-FIG-LINE Original Investigation initial JOURNAL_GUIDE conditional line drawing is supplied as a separate initial-submission file separate initial line drawing Initial submissions may supply figures separately; lin - Network accessline 97
jama-network-open JNO-REVISION-PAIR Original Investigation revision JOURNAL_GUIDE required revision invited revision package routing The public guide does not establish a universal clean marked and response file set; capture the exact live - Network accessline 98
jama-network-open JNO-REV-FIG-GRAPH Original Investigation revision JOURNAL_GUIDE conditional main-article statistical graph or plot exists separate revision graph or plot At revision each main figure is separate; graph and plot routes use - Network accessline 99
jama-network-open JNO-REV-FIG-FLOW Original Investigation revision JOURNAL_GUIDE conditional main-article flow diagram exists separate revision flow diagram At revision each main figure is separate; flow diagrams use the narrower publicatio - Network accessline 100
jama-network-open JNO-REV-FIG-ILLUS Original Investigation revision JOURNAL_GUIDE conditional main-article illustration exists separate revision illustration At revision each main figure is separate; illustrations follow the publication-for - Network accessline 101
jama-network-open JNO-REV-FIG-PHOTO Original Investigation revision JOURNAL_GUIDE conditional photograph clinical image radiograph microscopy CT MRI or ultrasound figure exists separate revision photographic or clinical image At revision ea - Network accessline 102
jama-network-open JNO-REV-FIG-LINE Original Investigation revision JOURNAL_GUIDE conditional line drawing exists separate revision line drawing At revision each main figure is separate; line drawings use JPG PSD or TIF and meet the stated m - Network accessline 103
jama-network-open JNO-INIT-FIG-MARKER-PAIR Original Investigation initial JOURNAL_GUIDE conditional photograph clinical image photomicrograph gel or similar image contains labels arrows or other markers initial marked and unmarked figure-pa - Network accessline 104
jama-network-open JNO-REV-FIG-MARKER-PAIR Original Investigation revision JOURNAL_GUIDE conditional photograph clinical image photomicrograph gel or similar image contains labels arrows or other markers revision marked and unmarked figure-p - Network accessline 105
jama-network-open JNO-EXAMPLE-1 Original Investigation published PUBLISHED_EXEMPLAR advisory medical AI published article Published Key Points and declarations are observation only https://jamanetwork.com/journals/jamanetworkopen/fullartic - Network accessline 106
nature-medicine NM-SI Article initial JOURNAL_GUIDE conditional supplementary content exists Supplementary Information Supplementary text and simple tables are normally combined as one PDF .pdf;.xlsx;.xls;.csv;.zip;.tar https://www.nature.c - Network accessline 107
nature-medicine NM-REV-PACKAGE Article revision JOURNAL_GUIDE required revision invited revision package Revised manuscript separate point-by-point response and change-cover letter are required https://www.nature.com/nm/submission-guidelin - Network accessline 108
nature-communications NCOM-REV-PACKAGE Article revision JOURNAL_GUIDE required revision invited revised manuscript and change-cover files A formatted revised manuscript and a change-cover letter are revision materials; accepted extensions a - Network accessline 109
nature-communications NCOM-REV-CLEAN-MARKED Article revision JOURNAL_GUIDE conditional revision invited clean and marked manuscript convention Universal clean plus marked pairing and exact extensions are not established publicly https://ww - Network accessline 110
nature-communications NCOM-REV-FIGURES Article revision JOURNAL_GUIDE conditional figures exist individual revision figure files For revised manuscripts all textual content is one Word or TeX file and figures are individual files; ordinary- - Network accessline 111
nature-communications NCOM-FINAL-SOURCE Article final-files JOURNAL_GUIDE required accepted final editable manuscript source Final manuscript source is Word or TeX/LaTeX .doc;.docx;.tex https://www.nature.com/ncomms/submit/article 2026-08-2 - Network accessline 112
nature-communications NCOM-FINAL-VECTOR Article final-files JOURNAL_GUIDE conditional line art graphs charts or schematics exist separate final vector figures Final line art graphs charts and schematics are supplied as vector EPS AI or PDF; - Network accessline 113
nature-communications NCOM-FINAL-RASTER Article final-files JOURNAL_GUIDE conditional photographic or bitmapped figures exist separate final raster figures Final photographic and bitmapped images are separate TIFF files at minimum 300 DPI a - Network accessline 114
lancet-digital-health TLDH-FIG-RASTER Article initial JOURNAL_GUIDE conditional raster photographic or clinical image figure exists raster figure files Raster and photographic figures use the guide's TIF or JPG route and meet its stated res - Network accessline 115
lancet-digital-health TLDH-FIG-FLOW Article initial JOURNAL_GUIDE conditional editable flowchart figure exists editable flowchart files Flowcharts are supplied in editable Word or PowerPoint format rather than flattened into the raster or v - Network accessline 116
lancet-digital-health TLDH-FIG-VECTOR Article initial JOURNAL_GUIDE conditional vector graph diagram or line-art figure exists vector figure files Vector figures follow the AI EPS vector-PDF PowerPoint Word or SVG route .ai;.eps;.pdf;.ppt;. - Network accessline 117
lancet-digital-health TLDH-TRIAL Article initial JOURNAL_GUIDE conditional clinical trial protocol reporting checklist and SAP Trial branch supplies protocol and CONSORT material and SAP when available .pdf;.doc;.docx https://www.thelancet. - Network accessline 118
lancet-digital-health TLDH-SI Article initial JOURNAL_GUIDE conditional supplement exists Supplementary Information Supplement is one PDF with contents and page numbers .pdf https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-a - Network accessline 119
eclinicalmedicine ECM-FIG-RASTER Article initial JOURNAL_GUIDE conditional raster photographic or clinical image figure exists raster figure files Raster and photographic figures use the guide's TIF or JPG route and meet its stated resoluti - Network accessline 120
eclinicalmedicine ECM-FIG-FLOW Article initial JOURNAL_GUIDE conditional editable flowchart figure exists editable flowchart files Flowcharts are supplied in editable Word or PowerPoint format rather than flattened into the raster or vector - Network accessline 121
eclinicalmedicine ECM-FIG-VECTOR Article initial JOURNAL_GUIDE conditional vector graph diagram or line-art figure exists vector figure files Vector figures follow the AI EPS vector-PDF PowerPoint Word or SVG route .ai;.eps;.pdf;.ppt;.pptx; - Network accessline 122
eclinicalmedicine ECM-TRIAL Article initial JOURNAL_GUIDE conditional clinical trial protocol reporting checklist and SAP Trial branch supplies protocol and reporting materials and SAP when available .pdf;.doc;.docx https://www.thelancet.co - Network accessline 123
eclinicalmedicine ECM-SI Article initial JOURNAL_GUIDE conditional supplement exists Supplementary Information Supplement is one PDF with contents and page numbers .pdf https://www.thelancet.com/pb-assets/Lancet/authors/ecm-info-for-authors - Network accessline 124
cancer-cell CC-REV-PACKAGE Research Article revision JOURNAL_GUIDE required revision invited revision package New cover point-by-point response and editable revised manuscript are revision materials https://www.cell.com/cancer-cell/informa - Network accessline 125
cancer-cell CC-FINAL-SOURCE Research Article final-files JOURNAL_GUIDE required accepted final editable manuscript source bundle Final source is editable Word or a LaTeX source plus checked PDF; a LaTeX route also needs a human-verified com - Network accessline 126
cell-reports-medicine CRM-REV-PACKAGE Research article revision JOURNAL_GUIDE required revision invited revision package New cover point-by-point response and editable revised manuscript are revision materials https://www.cell.com/cell-rep - Network accessline 127
cell-reports-medicine CRM-STAR Research article revision JOURNAL_GUIDE required revision invited or final package STAR Methods Revision/final uses STAR Methods and current template guidance .doc;.docx;.tex https://www.cell.com/cell-reports- - Network accessline 128
cell-reports-medicine CRM-KRT Research article revision JOURNAL_GUIDE conditional study uses biological materials models reagents software datasets or other key resources Key Resources Table Current STAR Methods/template requires the applic - Network accessline 129
cell-reports-medicine CRM-HIGHLIGHTS Research article final-files JOURNAL_GUIDE required final package Highlights and eTOC Highlights and eTOC are supplied in one Word file .doc;.docx https://www.cell.com/cell-reports-medicine/information-f - Network accessline 130
cell-reports-medicine CRM-FINAL-SOURCE Research article final-files JOURNAL_GUIDE required accepted final editable manuscript source bundle Final source is editable Word or a LaTeX source plus checked PDF; a LaTeX route also needs a human-v - Network accessline 131
npj-digital-medicine NPJDM-REV-PACKAGE Article revision JOURNAL_GUIDE required revision invited revision package Change-cover letter separate response and revised text are revision materials https://www.nature.com/npjdigitalmed/for-authors - Network accessline 132
npj-digital-medicine NPJDM-REV-CLEAN-MARKED Article revision JOURNAL_GUIDE conditional revision invited clean and marked manuscript convention Universal clean plus marked pairing and exact extensions are not established publicly https://ww - Network accessline 133
npj-digital-medicine NPJDM-REV-FIGURES Article revision JOURNAL_GUIDE conditional main-article figures are supplied during revision revision figure files or portal-designated figure items The public editorial-process page does not establish - Network accessline 134
npj-digital-medicine NPJDM-FINAL-SOURCE Article final-files JOURNAL_GUIDE required accepted final editable manuscript source Accepted final requires editable Word or TeX/LaTeX source rather than PDF alone .doc;.docx;.tex https://www.nature. - Network accessline 135
npj-precision-oncology NPJPO-REV-PACKAGE Article revision JOURNAL_GUIDE required revision invited revision package Change-cover letter separate response and revised text are revision materials https://www.nature.com/npjprecisiononcology/fo - Network accessline 136
npj-precision-oncology NPJPO-REV-CLEAN-MARKED Article revision JOURNAL_GUIDE conditional revision invited clean and marked manuscript convention Universal clean plus marked pairing and exact extensions are not established publicly https:// - Network accessline 137
npj-precision-oncology NPJPO-REV-FIGURES Article revision JOURNAL_GUIDE conditional main-article figures are supplied during revision revision figure files or portal-designated figure items The public editorial-process page does not establi - Network accessline 138
npj-precision-oncology NPJPO-FINAL-SOURCE Article final-files JOURNAL_GUIDE required accepted final editable manuscript source Accepted final requires editable Word or TeX/LaTeX source rather than PDF alone .doc;.docx;.tex https://www.natur - Network accessline 139
advanced-science AS-REV-PACKAGE Research Article revision JOURNAL_GUIDE required revision invited revision package Clean marked response and final production-file package could not be verified from accessible guide https://advanced.onlinel - Network accessline 140
jama-network-open JNO-REPORTING Original Investigation initial JOURNAL_GUIDE conditional declared Study Type matches a reporting standard reporting checklist Apply the current EQUATOR checklist selected by Study Type .pdf;.doc;.docx https:/ - Network accessline 141
npj-digital-medicine NPJDM-COI Article initial JOURNAL_GUIDE required all submissions signed competing-interests statement Corresponding author submits the mandatory signed statement for all authors; file versus portal mechanics require liv - Network accessline 142
npj-digital-medicine NPJDM-RELATED Article initial JOURNAL_GUIDE conditional related manuscript is under review or in press related manuscript copy and status Copies and status information are supplied as additional supporting information . - Network accessline 143
npj-digital-medicine NPJDM-CONSORT-PRISMA Article pre-review JOURNAL_GUIDE conditional trial or systematic review CONSORT or PRISMA checklist The journal specifically requires CONSORT and PRISMA before peer review for matching designs .pdf; - Network accessline 144
npj-digital-medicine NPJDM-OTHER-CHECKLISTS Article pre-review JOURNAL_GUIDE optional other matching study design other reporting checklist STROBE CARE COREQ SRQR STARD TRIPOD CHEERS and ARRIVE are strongly encouraged on the journal page un - Network accessline 145
npj-precision-oncology NPJPO-COI Article initial JOURNAL_GUIDE required all submissions signed competing-interests statement Corresponding author submits the mandatory signed statement for all authors; file versus portal mechanics require l - Network accessline 146
npj-precision-oncology NPJPO-RELATED Article initial JOURNAL_GUIDE conditional related manuscript is under review or in press related manuscript copy and status Copies and status information are supplied as additional supporting information - Network accessline 147
npj-precision-oncology NPJPO-CONSORT-PRISMA Article pre-review JOURNAL_GUIDE conditional trial or systematic review CONSORT or PRISMA checklist The journal specifically requires CONSORT and PRISMA before peer review for matching designs .pd - Network accessline 148
npj-precision-oncology NPJPO-OTHER-CHECKLISTS Article pre-review JOURNAL_GUIDE optional other matching study design other reporting checklist Other design checklists are strongly encouraged on the journal page unless another current policy
radiology-skills/skills/radiology-submission/references/journals/advanced-science.md
- Network accessline 10
- `AS-GUIDE`: [Advanced Science Author Guidelines](https://advanced.onlinelibrary.wiley.com/hub/journal/21983844/author-guidelines) — official, but content inaccessible (403) at snapshot. - Network accessline 11
- `AS-POLICY`: [Advanced Portfolio Editorial Policies](https://advanced.onlinelibrary.wiley.com/hub/editorial-policies) — official portfolio route used for the checklist obligation. - Network accessline 12
- `AS-DATA-CHECKS`: [Wiley Data Reporting Checklists](https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry) - Network accessline 13
- `AS-ML-CHECK`: [Machine Learning Research Data Reporting Checklist](https://onlinelibrary.wiley.com/pb-assets/hub-assets/chemistry-europe/checklists/Machine_Learning_Data_Reporting_Checklist-1695894214660.pdf) - Network accessline 14
- `WILEY-DATA`: [Wiley data sharing policies](https://authorservices.wiley.com/author-resources/Journal-Authors/open-access/data-sharing-citation/data-sharing-policy.html) - Network accessline 15
- `WILEY-ETHICS`: [Wiley publishing ethics](https://authors.wiley.com/ethics-guidelines/index.html) - Network accessline 16
- `AS-EM-DEV`: [Public Editorial Manager page](https://www.editorialmanager.com/advancedscience/) — - Network accessline 18
`PORTAL_PLACEHOLDER`/advisory discovery only: it is not the genuine submission instance, cannot be relabeled `PORTAL_CURRENT`, and cannot establish an upload designation, extension or required field. - `AS-ALT-GUIDE`: [Instructions for Au - Network accessline 19
relabeled `PORTAL_CURRENT`, and cannot establish an upload designation, extension or required field. - `AS-ALT-GUIDE`: [Instructions for Authors target linked by that development page](https://www.advancedscience.com/authorguidelines) — t - Network accessline 20
- `AS-ALT-GUIDE`: [Instructions for Authors target linked by that development page](https://www.advancedscience.com/authorguidelines) — - Network accessline 69
- [In Vivo Intelligent Fluorescence Endo-Microscopy by Varifocal Meta-Device and Deep Learning](https://advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202307837) (2024). - Network accessline 70
- [Unsupervised Segmentation of 3D Microvascular Photoacoustic Images Using Deep Generative Learning](https://advanced.onlinelibrary.wiley.com/doi/10.1002/advs.202402195) (2024).
radiology-skills/skills/radiology-submission/references/journals/cancer-cell.md
- Network accessline 10
- `CC-TYPES`: [Article types](https://www.cell.com/cancer-cell/information-for-authors/article-types) - Network accessline 11
- `CC-INITIAL`: [Initial submission](https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript) - Network accessline 12
- `CC-REVISE`: [Revision](https://www.cell.com/cancer-cell/information-for-authors/revise-manuscript) - Network accessline 13
- `CC-FINAL`: [Final submission](https://www.cell.com/cancer-cell/information-for-authors/final-submission) - Network accessline 14
- `CC-POLICY`: [Journal policies](https://www.cell.com/cancer-cell/information-for-authors/journal-policies) - Network accessline 15
- `CC-FFC`: [Current final-files checklist](https://www.cell.com/pb-assets/journals/EM/MasterFFCs/CCELLFFC-1785771261693.pdf) - Network accessline 16
- `CELL-STAR`: [STAR Methods guide](https://www.cell.com/pb-assets/journals/research/cell/methods/Methods_Guide_general-1776088412237.pdf) - Network accessline 17
- `CELL-AFTER`: [After you submit](https://www.cell.com/information-for-authors/after-you-submit) - Network accessline 76
- [Single-cell and spatial multi-omics analysis of CAFs across cancers](https://www.sciencedirect.com/science/article/pii/S1535610825000832) (2025). - Network accessline 77
- [Imaging mass cytometry and multi-omics breast-cancer spatial architecture](https://www.sciencedirect.com/science/article/pii/S1535610825002697) (2025).
radiology-skills/skills/radiology-submission/references/journals/cell-reports-medicine.md
- Network accessline 10
- `CRM-TYPES`: [Article types](https://www.cell.com/cell-reports-medicine/information-for-authors/article-types) - Network accessline 11
- `CRM-INITIAL`: [Initial submission](https://www.cell.com/cell-reports-medicine/information-for-authors/submit-manuscript) - Network accessline 12
- `CRM-REVISE`: [Revision](https://www.cell.com/cell-reports-medicine/information-for-authors/revise-manuscript) - Network accessline 13
- `CRM-FINAL`: [Final submission](https://www.cell.com/cell-reports-medicine/information-for-authors/final-submission) - Network accessline 14
- `CRM-POLICY`: [Journal policies](https://www.cell.com/cell-reports-medicine/information-for-authors/journal-policies) - Network accessline 15
- `CELL-STAR`: [STAR Methods guide](https://www.cell.com/pb-assets/journals/research/cell/methods/Methods_Guide_general-1776088412237.pdf) - Network accessline 16
- `CELL-TRIAL`: [Clinical trials submission checklist](https://www.cell.com/pb-assets/journals/ifa-assets/clinical-trials-submission-checklist-for-authors-1701981584220.pdf) - Network accessline 17
- `CELL-AFTER`: [After you submit](https://www.cell.com/information-for-authors/after-you-submit) - Network accessline 73
- [Clinical, IHC, metabolomic, pathomic, transcriptomic and genomic risk stratification](https://www.sciencedirect.com/science/article/pii/S2666379124006955) (2025). - Network accessline 74
- [Spatial transcriptomic and multiplex-IF study of primary immunotherapy resistance](https://www.sciencedirect.com/science/article/pii/S2666379125000072) (2025).
radiology-skills/skills/radiology-submission/references/journals/eclinicalmedicine.md
- Network accessline 9
- `ECM-IFA`: [Information for Authors, August 2026](https://www.thelancet.com/pb-assets/Lancet/authors/ecm-info-for-authors.pdf) - Network accessline 10
- `ECM-EM-DEV`: [Public Editorial Manager page](https://www.editorialmanager.com/eclinm) — currently - Network accessline 55
- [Multicentre MRI habitat radiomics and vision-transformer study](https://www.sciencedirect.com/science/article/pii/S258953702500118X) (2025). - Network accessline 56
- [Eleven-centre three-phase CT deep-learning radiomics study](https://www.sciencedirect.com/science/article/pii/S2589537024002979) (2024).
radiology-skills/skills/radiology-submission/references/journals/jama-network-open.md
- Network accessline 8
- `JNO-IFA`: [Instructions for Authors](https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors) - Network accessline 9
- `JNO-PORTAL`: [Manuscript Submission System](https://manuscripts.jamanetworkopen.com) — capture - Network accessline 73
- [AI Workflow, External Validation, and Development in Eye Disease Diagnosis](https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2836426) (2025). - Network accessline 74
- [Efficiency and Quality of Generative AI–Assisted Radiograph Reporting](https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2834943) (2025).
radiology-skills/skills/radiology-submission/references/journals/lancet-digital-health.md
- Network accessline 9
- `TLDH-IFA`: [Information for Authors, August 2026](https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-authors.pdf) - Network accessline 10
- `TLDH-EM-DEV`: [Public Editorial Manager page](https://www.editorialmanager.com/tldigitalhealth) — - Network accessline 60
- [Multicentre external-validation point-of-care ultrasound video AI study](https://www.sciencedirect.com/science/article/pii/S2589750024002498) (2025). - Network accessline 61
- [AI integration in breast screening across three countries](https://www.sciencedirect.com/science/article/pii/S2589750024001730) (2024).
radiology-skills/skills/radiology-submission/references/journals/nature-communications.md
- Network accessline 8
- `NCOM-ARTICLE`: [Article formatting and content](https://www.nature.com/ncomms/submit/article) - Network accessline 9
- `NCOM-SUBMIT`: [How to submit](https://www.nature.com/ncomms/submit/how-to-submit) - Network accessline 10
- `NCOM-PROCESS`: [Editorial process](https://www.nature.com/ncomms/submit/editorial-process) - Network accessline 11
- `NCOM-RESOURCES`: [Submission resources and forms](https://www.nature.com/ncomms/submit/resources) - Network accessline 12
- `NCOM-CLINICAL`: [Clinical research](https://www.nature.com/ncomms/submit/clinical-research) - Network accessline 13
- `NCOM-REPORTING`: [Reporting and availability](https://www.nature.com/ncomms/editorial-policies/reporting-standards) - Network accessline 14
- `NCOM-PORTAL`: [Exact Nature Communications submission portal](https://mts-ncomms.nature.com/) — - Network accessline 71
- [Towards a holistic framework for multimodal LLM in 3D brain CT radiology report generation](https://www.nature.com/articles/s41467-025-57426-0) (2025). - Network accessline 72
- [A clinically accessible small multimodal radiology model and evaluation metric for chest X-ray findings](https://www.nature.com/articles/s41467-025-58344-x) (2025).
radiology-skills/skills/radiology-submission/references/journals/nature-medicine.md
- Network accessline 8
- `NM-SUBMIT`: [Submission guidelines](https://www.nature.com/nm/submission-guidelines) - Network accessline 9
- `NM-PREP`: [Preparing your submission](https://www.nature.com/nm/submission-guidelines/preparing-your-submission) - Network accessline 10
- `NM-INITIAL`: [Formatting the initial submission](https://www.nature.com/nm/submission-guidelines/initial-formatting) - Network accessline 11
- `NM-CONTENT`: [Content types](https://www.nature.com/nm/content) - Network accessline 12
- `NM-DAPR`: [Double-anonymized peer review](https://www.nature.com/nm/submission-guidelines/dapr) - Network accessline 13
- `NM-CLINICAL`: [Clinical research](https://www.nature.com/nm/editorial-policies/clinicalresearch) - Network accessline 14
- `NM-REPORTING`: [Reporting standards](https://www.nature.com/nm/editorial-policies/reporting-standards) - Network accessline 15
- `NM-AIP`: [Accepted-paper formatting](https://www.nature.com/nm/submission-guidelines/aip-and-formatting) - Network accessline 16
- `NM-PORTAL`: [Exact Nature Medicine submission portal](https://mts-nmed.nature.com/) — use only - Network accessline 66
- [Nationwide real-world implementation of AI for cancer detection in population-based mammography screening](https://www.nature.com/articles/s41591-024-03408-6) (2025). - Network accessline 67
- [Health system learning enables generalist neuroimaging models](https://www.nature.com/articles/s41591-026-04497-1) (2026).
radiology-skills/skills/radiology-submission/references/journals/npj-digital-medicine.md
- Network accessline 7
- `NPJDM-HUB`: [For Authors and Referees](https://www.nature.com/npjdigitalmed/for-authors-and-referees) - Network accessline 8
- `NPJDM-SUBMIT`: [Submission information](https://www.nature.com/npjdigitalmed/for-authors-and-referees/submisions) - Network accessline 9
- `NPJDM-GUIDE`: [Guide to Authors](https://www.nature.com/npjdigitalmed/for-authors-and-referees/guide-to-authors) - Network accessline 10
- `NPJDM-CONTENT`: [Content types](https://www.nature.com/npjdigitalmed/content-types) - Network accessline 11
- `NPJDM-PROCESS`: [Editorial process](https://www.nature.com/npjdigitalmed/for-authors-and-referees/editorial-process) - Network accessline 12
- `NPJDM-REPORTING`: [Reporting standards](https://www.nature.com/npjdigitalmed/for-authors-and-referees/about/editorial-policies/reporting-standards) - Network accessline 13
- `NPJDM-PORTAL`: [Exact Springer Nature submission context 41746/3](https://submission.springernature.com/new-submission/41746/3) — - Network accessline 72
- [Shortcut learning in medical AI hinders generalization](https://www.nature.com/articles/s41746-024-01118-4) (2024). - Network accessline 73
- [Synthetic data trained open-source language models are feasible alternatives to proprietary models for radiology reporting](https://www.nature.com/articles/s41746-025-01658-3) (2025).
radiology-skills/skills/radiology-submission/references/journals/npj-precision-oncology.md
- Network accessline 8
- `NPJPO-HUB`: [For Authors and Referees](https://www.nature.com/npjprecisiononcology/for-authors-and-referees) - Network accessline 9
- `NPJPO-SUBMIT`: [Submission information](https://www.nature.com/npjprecisiononcology/for-authors-and-referees/submisions) - Network accessline 10
- `NPJPO-GUIDE`: [Guide to Authors](https://www.nature.com/npjprecisiononcology/for-authors-and-referees/guide-to-authors) - Network accessline 11
- `NPJPO-CONTENT`: [Content types](https://www.nature.com/npjprecisiononcology/content-types) - Network accessline 12
- `NPJPO-PROCESS`: [Editorial process](https://www.nature.com/npjprecisiononcology/for-authors-and-referees/editorial-process) - Network accessline 13
- `NPJPO-REPORTING`: [Reporting standards](https://www.nature.com/npjprecisiononcology/for-authors-and-referees/about/editorial-policies/reporting-standards) - Network accessline 14
- `NPJPO-PORTAL`: [Exact Springer Nature submission context 41698/3](https://submission.springernature.com/new-submission/41698/3) — - Network accessline 67
- [Learning generalizable AI models for multi-center histopathology image classification](https://www.nature.com/articles/s41698-024-00652-4) (2024). - Network accessline 68
- [An integrated MRI-based diagnostic framework for glioma with incomplete imaging sequences and imperfect annotations](https://www.nature.com/articles/s41698-025-01112-3) (2025).
radiology-skills/skills/radiology-submission/references/journals/radiology.md
- Network accessline 8
- `RAD-IFA`: [Radiology Publication Instructions for Authors](https://pubs.rsna.org/page/radiology/author-instructions) - Network accessline 9
- `RAD-STYLE`: [Scientific editing guidance](https://pubs.rsna.org/page/radiology/author-instructions/scientificediting) - Network accessline 10
- `RAD-POLICY`: [RSNA Journals Editorial Policies](https://pubs.rsna.org/page/policies) - Network accessline 11
- `RAD-ACK-FORM`: [Acknowledgment and Permission Form (DOCX)](https://pubs.rsna.org/pb-assets/Radiology/PIA/AcknowledgePermissionFormRY-1705075670100.docx) - Network accessline 12
- `RAD-PORTAL`: [Radiology ScholarOne](https://mc.manuscriptcentral.com/rad) — current instance fields - Network accessline 85
- [Constructing a Large Language Model to Generate Impressions from Findings in Radiology Reports](https://pubs.rsna.org/doi/10.1148/radiol.240885) (2024). - Network accessline 86
- [Adaptive Breast MRI Scanning Using AI](https://pubs.rsna.org/doi/10.1148/radiol.242924) (2025).
radiology-skills/skills/radiology-submission/scripts/audit_submission_package.py
- Executable scriptline 1
#!/usr/bin/env python3 - Possible obfuscationline 662
if head.startswith(b"\x30\x26\xb2\x75\x8e\x66\xcf\x11\xa6\xd9\x00\xaa\x00\x62\xce\x6c"): - Possible obfuscationline 664
if head.startswith((b"\x00\x00\x01\xba", b"\x00\x00\x01\xb3")): - Possible obfuscationline 670
if head.startswith(b"\xd7\xcd\xc6\x9a"): - Possible obfuscationline 680
if head.startswith(b"\xd0\xcf\x11\xe0\xa1\xb1\x1a\xe1"): - Network accessline 851
WORDPROCESSING_NAMESPACES = { "http://schemas.openxmlformats.org/wordprocessingml/2006/main", - Network accessline 852
"http://schemas.openxmlformats.org/wordprocessingml/2006/main", - Network accessline 853
"http://purl.oclc.org/ooxml/wordprocessingml/main", - Network accessline 854
} DC_NAMESPACE = "http://purl.org/dc/elements/1.1/" CORE_NAMESPACE = "http://schemas.openxmlformats.org/package/2006/metadata/core-properties" - Network accessline 855
DC_NAMESPACE = "http://purl.org/dc/elements/1.1/" - Network accessline 856
CORE_NAMESPACE = "http://schemas.openxmlformats.org/package/2006/metadata/core-properties" - Network accessline 883
expected_roots = { "docx": { ("http://schemas.openxmlformats.org/wordprocessingml/2006/main", "document"), - Network accessline 884
"docx": { ("http://schemas.openxmlformats.org/wordprocessingml/2006/main", "document"), ("http://purl.oclc.org/ooxml/wordprocessingml/main", "document"), - Network accessline 885
("http://schemas.openxmlformats.org/wordprocessingml/2006/main", "document"), - Network accessline 886
("http://purl.oclc.org/ooxml/wordprocessingml/main", "document"), - Network accessline 887
}, "xlsx": { ("http://schemas.openxmlformats.org/spreadsheetml/2006/main", "workbook"), - Network accessline 888
"xlsx": { ("http://schemas.openxmlformats.org/spreadsheetml/2006/main", "workbook"), ("http://purl.oclc.org/ooxml/spreadsheetml/main", "workbook"), - Network accessline 889
("http://schemas.openxmlformats.org/spreadsheetml/2006/main", "workbook"), - Network accessline 890
("http://purl.oclc.org/ooxml/spreadsheetml/main", "workbook"), - Network accessline 891
}, "pptx": { ("http://schemas.openxmlformats.org/presentationml/2006/main", "presentation"), - Network accessline 892
"pptx": { ("http://schemas.openxmlformats.org/presentationml/2006/main", "presentation"), ("http://purl.oclc.org/ooxml/presentationml/main", "presentation"), - Network accessline 893
("http://schemas.openxmlformats.org/presentationml/2006/main", "presentation"), - Network accessline 894
("http://purl.oclc.org/ooxml/presentationml/main", "presentation"), - Network accessline 896
} relationship_types = { "http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument", - Network accessline 897
relationship_types = { "http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument", "http://purl.oclc.org/ooxml/officeDocument/relationships/officeDocument", - Network accessline 898
"http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument", - Network accessline 899
"http://purl.oclc.org/ooxml/officeDocument/relationships/officeDocument", - Network accessline 915
rels_ns, rels_local = expanded_name(rels_root.tag) if (types_ns, types_local) != ( "http://schemas.openxmlformats.org/package/2006/content-types", "Types", - Network accessline 916
if (types_ns, types_local) != ( "http://schemas.openxmlformats.org/package/2006/content-types", "Types", ): - Network accessline 917
"http://schemas.openxmlformats.org/package/2006/content-types", "Types", - Network accessline 919
return False if (rels_ns, rels_local) != ( "http://schemas.openxmlformats.org/package/2006/relationships", "Relationships", - Network accessline 920
if (rels_ns, rels_local) != ( "http://schemas.openxmlformats.org/package/2006/relationships", "Relationships", ): - Network accessline 921
"http://schemas.openxmlformats.org/package/2006/relationships", "Relationships",
radiology-skills/skills/radiology-submission/scripts/render_submission_audit_report.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-submission/scripts/resolve_submission_intake.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-submission/scripts/submission_security.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-submission/scripts/test_audit_submission_package.py
- Executable scriptline 1
#!/usr/bin/env python3 - Network accessline 46
document = ( '<?xml version="1.0" encoding="UTF-8" standalone="yes"?>' '<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main">' - Network accessline 47
'<?xml version="1.0" encoding="UTF-8" standalone="yes"?>' '<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main">' f"<w:body><w:p><w:r><w:t>{text}</w:t></w:r>{change}</w:p></w:body></w:document>" - Network accessline 48
'<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main">' - Network accessline 52
archive.writestr( "[Content_Types].xml", '<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' - Network accessline 53
"[Content_Types].xml", '<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' '<Override PartName="/word/document.xml" ' - Network accessline 54
'<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' - Network accessline 59
archive.writestr( "_rels/.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 60
"_rels/.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' '<Relationship Id="rId1" ' - Network accessline 61
'<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 62
'<Relationship Id="rId1" ' 'Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument" ' 'Target="word/document.xml"/>' - Network accessline 63
'Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument" ' - Network accessline 69
archive.writestr( "docProps/core.xml", '<cp:coreProperties xmlns:cp="http://schemas.openxmlformats.org/package/2006/metadata/core-properties" ' - Network accessline 70
"docProps/core.xml", '<cp:coreProperties xmlns:cp="http://schemas.openxmlformats.org/package/2006/metadata/core-properties" ' 'xmlns:dc="http://purl.org/dc/elements/1.1/">' - Network accessline 71
'<cp:coreProperties xmlns:cp="http://schemas.openxmlformats.org/package/2006/metadata/core-properties" ' - Network accessline 72
'xmlns:dc="http://purl.org/dc/elements/1.1/">' - Network accessline 80
def make_alt_namespace_docx(path: Path, *, utf16_placeholder: bool = False) -> None: word_ns = "http://schemas.openxmlformats.org/wordprocessingml/2006/main" - Network accessline 81
word_ns = "http://schemas.openxmlformats.org/wordprocessingml/2006/main" - Network accessline 93
archive.writestr( "[Content_Types].xml", '<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' - Network accessline 94
"[Content_Types].xml", '<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' '<Override PartName="/word/document.xml" ' - Network accessline 95
'<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' - Network accessline 100
archive.writestr( "_rels/.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 101
"_rels/.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' '<Relationship Id="rId1" ' - Network accessline 102
'<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 103
'<Relationship Id="rId1" ' 'Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument" ' 'Target="word/document.xml"/>' - Network accessline 104
'Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument" ' - Network accessline 113
archive.writestr( "docProps/core.xml", '<c:coreProperties xmlns:c="http://schemas.openxmlformats.org/package/2006/metadata/core-properties" ' - Network accessline 114
"docProps/core.xml", '<c:coreProperties xmlns:c="http://schemas.openxmlformats.org/package/2006/metadata/core-properties" ' 'xmlns:d="http://purl.org/dc/elements/1.1/">' - Network accessline 115
'<c:coreProperties xmlns:c="http://schemas.openxmlformats.org/package/2006/metadata/core-properties" ' - Network accessline 116
'xmlns:d="http://purl.org/dc/elements/1.1/">' - Network accessline 134
b'<?xpacket begin=""?>' b'<x:xmpmeta xmlns:x="adobe:ns:meta/">' b'<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">' - Network accessline 135
b'<x:xmpmeta xmlns:x="adobe:ns:meta/">' b'<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">' b'<rdf:Description xmlns:dc="http://purl.org/dc/elements/1.1/">' - Network accessline 136
b'<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">' - Network accessline 137
b'<rdf:Description xmlns:dc="http://purl.org/dc/elements/1.1/">' - Network accessline 211
"rule_id": "RAD-INITIAL-MAIN", "authority_class": "JOURNAL_GUIDE", "source_url": "https://pubs.rsna.org/page/radiology/author-instructions", - Network accessline 212
"authority_class": "JOURNAL_GUIDE", "source_url": "https://pubs.rsna.org/page/radiology/author-instructions", "guide_verified_on": "2026-08-22", - Network accessline 213
"source_url": "https://pubs.rsna.org/page/radiology/author-instructions", - Network accessline 277
def complete_radiology_rows(root: Path) -> list[dict[str, str]]: source = "https://pubs.rsna.org/page/radiology/author-instructions" - Network accessline 278
source = "https://pubs.rsna.org/page/radiology/author-instructions" - Network accessline 321
def complete_jno_rows(root: Path) -> list[dict[str, str]]: guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 322
guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 362
def complete_jno_rows_with_marker_pair(root: Path) -> list[dict[str, str]]: guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 363
guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 414
def complete_ncom_rows(root: Path) -> list[dict[str, str]]: guide = "https://www.nature.com/ncomms/submit/how-to-submit" - Network accessline 415
guide = "https://www.nature.com/ncomms/submit/how-to-submit" - Network accessline 428
"item_id": "COVER", "journal_id": "nature-communications", "article_type": "Article", "rule_id": "NCOM-COVER", "material": "cover letter", "authority_class": "PORTAL_CURRENT", "source_url": "https://mts-ncomms.nature.com/", - Network accessline 429
"rule_id": "NCOM-COVER", "material": "cover letter", "authority_class": "PORTAL_CURRENT", "source_url": "https://mts-ncomms.nature.com/", "expected_extensions": ".docx", "blinded": "false", "review_model": "single-anonymized - Network accessline 430
"source_url": "https://mts-ncomms.nature.com/", "expected_extensions": ".docx", - Network accessline 457
"submission_stage": "final-files", "rule_id": "NCOM-FINAL-SOURCE", "material": "editable manuscript source", "source_url": "https://www.nature.com/ncomms/submit/article", - Network accessline 458
"material": "editable manuscript source", "source_url": "https://www.nature.com/ncomms/submit/article", "blinded": "false", "review_model": "double-anonymized", - Network accessline 459
"source_url": "https://www.nature.com/ncomms/submit/article", - Network accessline 466
): row = conditional_na( rule_id, material, "https://www.nature.com/ncomms/submit/how-to-submit", - Network accessline 467
row = conditional_na( rule_id, material, "https://www.nature.com/ncomms/submit/how-to-submit", ) - Network accessline 468
rule_id, material, "https://www.nature.com/ncomms/submit/how-to-submit", - Network accessline 479
root: Path, *, source_mode: str = "word", ) -> list[dict[str, str]]: final_guide = "https://www.cell.com/cancer-cell/information-for-authors/final-submission" - Network accessline 480
) -> list[dict[str, str]]: final_guide = "https://www.cell.com/cancer-cell/information-for-authors/final-submission" revision_guide = "https://www.cell.com/cancer-cell/information-for-authors/revise-manuscript" - Network accessline 481
final_guide = "https://www.cell.com/cancer-cell/information-for-authors/final-submission" - Network accessline 482
revision_guide = "https://www.cell.com/cancer-cell/information-for-authors/revise-manuscript" - Network accessline 818
"condition": "photograph clinical image radiograph microscopy CT MRI or ultrasound figure is supplied as a separate initial-submission file", "rule_id": "JNO-INIT-FIG-PHOTO", "source_url": "https://jamanetwor - Network accessline 819
"rule_id": "JNO-INIT-FIG-PHOTO", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", "expected_extensions": ".docx", "blinded": "false", - Network accessline 820
"source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", - Network accessline 921
"requirement_class": "conditional", "condition": "photographic or bitmapped figures exist", "rule_id": "NCOM-FINAL-RASTER", "source_url": "https://www.nature.com/ncomms/submit/how-to-submit", - Network accessline 922
"rule_id": "NCOM-FINAL-RASTER", "source_url": "https://www.nature.com/ncomms/submit/how-to-submit", "expected_extensions": ".docx", "blinded": "false", - Network accessline 923
"source_url": "https://www.nature.com/ncomms/submit/how-to-submit", - Network accessline 944
"condition": "raster photographic or clinical image figure exists", "rule_id": "TLDH-FIG-RASTER", "source_url": "https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-authors.pdf", - Network accessline 945
"rule_id": "TLDH-FIG-RASTER", "source_url": "https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-authors.pdf", "expected_extensions": ".docx", "blinded": "false", - Network accessline 946
"source_url": "https://www.thelancet.com/pb-assets/Lancet/authors/tldh-info-for-authors.pdf", - Network accessline 1145
"submission_stage": "final-files", "material": "editable manuscript source", "rule_id": "NPJDM-FINAL-SOURCE", "source_url": "https://www.nature.com/npjdigitalmed/for-authors-and-referees/submisions", - Network accessline 1146
"rule_id": "NPJDM-FINAL-SOURCE", "source_url": "https://www.nature.com/npjdigitalmed/for-authors-and-referees/submisions", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1147
"https://www.nature.com/npjdigitalmed/for-authors-and-referees/submisions", - Network accessline 1153
"article_type": "Article", "submission_stage": "final-files", "material": "borrowed sibling rule", "rule_id": "NCOM-FINAL-SOURCE", "source_url": "https://www.nature.com/ncomms/submit/article", - Network accessline 1154
"material": "borrowed sibling rule", "rule_id": "NCOM-FINAL-SOURCE", "source_url": "https://www.nature.com/ncomms/submit/article", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1155
"source_url": "https://www.nature.com/ncomms/submit/article", - Network accessline 1170
"review_model": "single-anonymized", "material": "revision package", "rule_id": "NPJDM-REV-PACKAGE", "source_url": "https://www.nature.com/npjdigitalmed/for-authors-and-referees/editorial-process", - Network accessline 1171
"rule_id": "NPJDM-REV-PACKAGE", "source_url": "https://www.nature.com/npjdigitalmed/for-authors-and-referees/editorial-process", "expected_extensions": "", "version": "", "blinded": "false", - Network accessline 1172
"source_url": "https://www.nature.com/npjdigitalmed/for-authors-and-referees/editorial-process", - Network accessline 1262
make_docx(main_path) make_docx(cover_path) guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 1263
make_docx(cover_path) guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" main = base_row("manuscript.docx", digest(main_path)) - Network accessline 1264
guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 1300
"article_type": "Original Investigation", "material": "cover letter", "requirement_class": "optional", "rule_id": "JNO-COVER", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instruction - Network accessline 1301
"requirement_class": "optional", "rule_id": "JNO-COVER", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", "expected_extensions": "", "blinded": "false", - Network accessline 1302
"source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", - Network accessline 1320
"article_type": "Original Investigation", "material": "cover letter", "requirement_class": "optional", "rule_id": "JNO-COVER", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instruction - Network accessline 1321
"requirement_class": "optional", "rule_id": "JNO-COVER", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", "expected_extensions": ".docx", "version": "", "blinde - Network accessline 1322
"source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", - Network accessline 1386
"article_type": "Research Article", "material": "cover letter", "rule_id": "CC-COVER", "source_url": "https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript", - Network accessline 1387
"rule_id": "CC-COVER", "source_url": "https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1388
"https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript", - Network accessline 1403
"article_type": "Research Article", "material": "cover letter", "rule_id": "CC-COVER", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1404
"rule_id": "CC-COVER", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", "expected_extensions": ".docx", "blinded": "false", "notes": "", - Network accessline 1405
"source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1421
"article_type": "Research Article", "material": "cover letter", "rule_id": "CC-COVER", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1422
"rule_id": "CC-COVER", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1423
"source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1440
"material": "manuscript accepted extension", "rule_id": "AS-MAIN-TYPE", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1441
"authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1442
"source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1446
checklist = conditional_na( "AS-ML-CHECK", "Machine Learning Data Reporting Checklist", "https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", - Network accessline 1447
"AS-ML-CHECK", "Machine Learning Data Reporting Checklist", "https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", blinded="false", - Network accessline 1448
"https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", - Network accessline 1471
"material": "manuscript accepted extension", "requirement_class": "portal-only", "rule_id": "AS-MAIN-TYPE", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1472
"rule_id": "AS-MAIN-TYPE", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", "expected_extensions": "", "version": "", "blinded": "not-applicable", - Network accessline 1473
"source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1485
"requirement_class": "conditional", "condition": "machine-learning research", "rule_id": "AS-ML-CHECK", "authority_class": "PUBLISHER_POLICY", "source_url": "https://onlinelibrary.wiley.com/products/journals/ - Network accessline 1486
"rule_id": "AS-ML-CHECK", "authority_class": "PUBLISHER_POLICY", "source_url": "https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", "expected_extensions": ".docx", "blinded": "false" - Network accessline 1487
"source_url": "https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", - Network accessline 1514
row = base_row(sha256=digest(manuscript)) row["authority_class"] = "PUBLISHED_EXEMPLAR" row["source_url"] = "https://pubs.rsna.org/doi/10.1148/radiol.240885" - Network accessline 1515
row["authority_class"] = "PUBLISHED_EXEMPLAR" row["source_url"] = "https://pubs.rsna.org/doi/10.1148/radiol.240885" write_manifest(root, [row]) - Network accessline 1516
row["source_url"] = "https://pubs.rsna.org/doi/10.1148/radiol.240885" - Network accessline 1722
archive.writestr( "word/document.xml", '<x:document xmlns:x="http://schemas.openxmlformats.org/wordprocessingml/2006/main">' - Network accessline 1723
"word/document.xml", '<x:document xmlns:x="http://schemas.openxmlformats.org/wordprocessingml/2006/main">' '<x:body><x:p><x:r><x:t>clean shadow</x:t></x:r></x:p></x:body></x:document>', - Network accessline 1724
'<x:document xmlns:x="http://schemas.openxmlformats.org/wordprocessingml/2006/main">' - Network accessline 1739
archive.writestr( "wordXdocument.xml", '<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main"><w:body/></w:document>', - Network accessline 1740
"wordXdocument.xml", '<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main"><w:body/></w:document>', ) - Network accessline 1741
'<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main"><w:body/></w:document>', - Network accessline 1762
archive.writestr( "[Content_Types].xml", '<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' - Network accessline 1763
"[Content_Types].xml", '<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' '<Override PartName="/word/document.xml" ContentType="application/octet-stream"/>' - Network accessline 1764
'<Types xmlns="http://schemas.openxmlformats.org/package/2006/content-types">' - Network accessline 1768
archive.writestr( "_rels/.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 1769
"_rels/.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' '<Relationship Id="rId1" ' - Network accessline 1770
'<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 1771
'<Relationship Id="rId1" ' 'Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument" ' 'Target="word/document.xml"/></Relationships>', - Network accessline 1772
'Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/officeDocument" ' - Network accessline 1775
archive.writestr( "word/document.xml", '<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main"><w:body/></w:document>', - Network accessline 1776
"word/document.xml", '<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main"><w:body/></w:document>', ) - Network accessline 1777
'<w:document xmlns:w="http://schemas.openxmlformats.org/wordprocessingml/2006/main"><w:body/></w:document>', - Network accessline 1804
"material": "Supplementary Information", "requirement_class": "conditional", "condition": "supplementary content exists", "rule_id": "NCOM-SI", "source_url": "https://www.nature.com/ncomms/submit/how-to-submi - Network accessline 1805
"condition": "supplementary content exists", "rule_id": "NCOM-SI", "source_url": "https://www.nature.com/ncomms/submit/how-to-submit", "expected_extensions": ".zip", "blinded": "false", - Network accessline 1806
"source_url": "https://www.nature.com/ncomms/submit/how-to-submit", - Network accessline 1825
"material": "Supplementary Information", "requirement_class": "conditional", "condition": "supplementary content exists", "rule_id": "NCOM-SI", "source_url": "https://www.nature.com/ncomms/submit/how-to-submi - Network accessline 1826
"condition": "supplementary content exists", "rule_id": "NCOM-SI", "source_url": "https://www.nature.com/ncomms/submit/how-to-submit", "expected_extensions": ".txt", "blinded": "false", - Network accessline 1827
"source_url": "https://www.nature.com/ncomms/submit/how-to-submit", - Possible obfuscationline 1840
manuscript.write_bytes(b"\xd0\xcf\x11\xe0\xa1\xb1\x1a\xe1" + b"\x00" * 2048) - Network accessline 1843
"journal_id": "jama-network-open", "article_type": "Original Investigation", "rule_id": "JNO-MAIN", "material": "main manuscript", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instruc - Network accessline 1844
"rule_id": "JNO-MAIN", "material": "main manuscript", "source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", "expected_extensions": ".doc", "blinded": "false", - Network accessline 1845
"source_url": "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors", - Network accessline 1881
"material": "manuscript accepted extension", "rule_id": "AS-MAIN-TYPE", "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/advancedscience/default.aspx", - Network accessline 1882
"authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/advancedscience/default.aspx", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1883
"source_url": "https://www.editorialmanager.com/advancedscience/default.aspx", - Network accessline 1887
checklist = conditional_na( "AS-ML-CHECK", "Machine Learning Data Reporting Checklist", "https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", - Network accessline 1888
"AS-ML-CHECK", "Machine Learning Data Reporting Checklist", "https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", blinded="false", - Network accessline 1889
"https://onlinelibrary.wiley.com/products/journals/data-checklists-chemistry", - Network accessline 1910
"material": "manuscript accepted extension", "rule_id": "AS-MAIN-TYPE", "authority_class": "PORTAL_PLACEHOLDER", "source_url": "https://www.editorialmanager.com/advancedscience/default.aspx", - Network accessline 1911
"authority_class": "PORTAL_PLACEHOLDER", "source_url": "https://www.editorialmanager.com/advancedscience/default.aspx", "expected_extensions": ".docx", "blinded": "false", - Network accessline 1912
"source_url": "https://www.editorialmanager.com/advancedscience/default.aspx", - Network accessline 1927
make_docx(cover_path) make_pdf(doi_path) guide = "https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript" - Network accessline 1928
make_pdf(doi_path) guide = "https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript" rows: list[dict[str, str]] = [] - Network accessline 1929
guide = "https://www.cell.com/cancer-cell/information-for-authors/submit-manuscript" - Network accessline 1943
row.update({ "authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 1944
"authority_class": "PORTAL_CURRENT", "source_url": "https://www.editorialmanager.com/cancer-cell/", "notes": portal_receipt( - Network accessline 1945
"source_url": "https://www.editorialmanager.com/cancer-cell/", - Network accessline 2047
archive.writestr( "word/_rels/document.xml.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 2048
"word/_rels/document.xml.rels", '<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' '<Relationship Id="rRemote" Type="http://schemas.openxmlformats.org/officeDocumen - Network accessline 2049
'<Relationships xmlns="http://schemas.openxmlformats.org/package/2006/relationships">' - Network accessline 2050
'<Relationship Id="rRemote" Type="http://schemas.openxmlformats.org/officeDocument/2006/relationships/attachedTemplate" ' - Network accessline 2051
'TargetMode="External" Target="https://tracker.invalid/template.dotm"/>'
radiology-skills/skills/radiology-submission/scripts/test_submission_golden_scenarios.py
- Executable scriptline 1
#!/usr/bin/env python3 - Possible obfuscationline 138
path.write_bytes(b"II*\x00\x08\x00\x00\x00" + marker) - Network accessline 147
"submission_cycle": "2027", "submission_type": "Scientific abstract", "current_call_url": "https://congress.test/2027/abstract-call", - Network accessline 148
"submission_type": "Scientific abstract", "current_call_url": "https://congress.test/2027/abstract-call", "portal_url": "https://submit.congress.test/2027/abstracts", - Network accessline 149
"current_call_url": "https://congress.test/2027/abstract-call", - Network accessline 150
"portal_url": "https://submit.congress.test/2027/abstracts", - Network accessline 198
"material": "conference abstract upload file", "portal_designation": "Abstract file", "requirement_class": "required", "authority_class": "CURRENT_CALL", "source_url": "https://congress.test/2027/abstract-call", "verified_on - Network accessline 199
"requirement_class": "required", "authority_class": "CURRENT_CALL", "source_url": "https://congress.test/2027/abstract-call", "verified_on": "2026-08-23", "allowed_extensions": ".txt", "max_bytes": "100000", - Network accessline 200
"source_url": "https://congress.test/2027/abstract-call", "verified_on": "2026-08-23", - Network accessline 208
"material": "conference abstract title portal field", "portal_designation": "Abstract title", "requirement_class": "required", "authority_class": "PORTAL_CURRENT", "source_url": "https://submit.congress.test/2027/abstracts", - Network accessline 209
"requirement_class": "required", "authority_class": "PORTAL_CURRENT", "source_url": "https://submit.congress.test/2027/abstracts", "verified_on": "2026-08-23", "allowed_extensions": "", "max_bytes": "", - Network accessline 210
"source_url": "https://submit.congress.test/2027/abstracts", "verified_on": "2026-08-23", - Network accessline 218
"material": "conference disclosure attestation", "portal_designation": "Disclosure certification", "requirement_class": "required", "authority_class": "PORTAL_CURRENT", "source_url": "https://submit.congress.test/2027/abstra - Network accessline 219
"requirement_class": "required", "authority_class": "PORTAL_CURRENT", "source_url": "https://submit.congress.test/2027/abstracts", "verified_on": "2026-08-23", "allowed_extensions": "", "max_bytes": "", - Network accessline 220
"source_url": "https://submit.congress.test/2027/abstracts", "verified_on": "2026-08-23", - Network accessline 231
def jno_revision_rows(root: Path) -> list[dict[str, str]]: guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 232
guide = "https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors" - Network accessline 233
portal = "https://manuscripts.jamanetworkopen.com/" - Network accessline 308
def npjdm_revision_rows(root: Path, *, resolve_figures: bool) -> list[dict[str, str]]: public_guide = "https://www.nature.com/npjdigitalmed/for-authors-and-referees/editorial-process" - Network accessline 309
public_guide = "https://www.nature.com/npjdigitalmed/for-authors-and-referees/editorial-process" - Network accessline 310
portal = "https://submission.springernature.com/new-submission/41746/" - Network accessline 412
intake.update({ "submission_cycle": cli_cycle, "current_call_url": f"https://congress.test/{cli_cycle}/abstract-call", - Network accessline 413
"submission_cycle": cli_cycle, "current_call_url": f"https://congress.test/{cli_cycle}/abstract-call", "portal_url": f"https://submit.congress.test/{cli_cycle}/abstracts", - Network accessline 414
"current_call_url": f"https://congress.test/{cli_cycle}/abstract-call", - Network accessline 415
"portal_url": f"https://submit.congress.test/{cli_cycle}/abstracts", - Network accessline 512
main["item_id"] = ( "<script>alert(1)</script> **fake PASS** " " [click](javascript:alert(1))" - Network accessline 513
"<script>alert(1)</script> **fake PASS** " " [click](javascript:alert(1))" ) - Network accessline 514
" [click](javascript:alert(1))"
radiology-skills/skills/radiology-submission/scripts/validate_conference_portal_package.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-submission/scripts/validate_submission_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-submission/scripts/validate_submission_skill.py
- Executable scriptline 1
#!/usr/bin/env python3 - Network accessline 482
and authority == "PORTAL_CURRENT" and row["source_url"].rstrip("/").casefold() == "https://www.editorialmanager.com/advancedscience".casefold() - Network accessline 483
and row["source_url"].rstrip("/").casefold() == "https://www.editorialmanager.com/advancedscience".casefold() and verification != "UNVERIFIED_CURRENT" - Network accessline 484
== "https://www.editorialmanager.com/advancedscience".casefold()
radiology-skills/skills/radiology-systematic-review/scripts/validate_systematic_review_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-table/scripts/audit_table_csv.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-table/tests/test_audit_table_csv.py
- Executable scriptline 1
#!/usr/bin/env python3
radiology-skills/skills/radiology-transcriptomics-analysis/scripts/validate_transcriptomics_analysis_skill.ps1
- Executable scriptline 1
Executable file
radiology-skills/skills/radiology-translation/references/clinical-impact-study-design.md
- Network accessline 153
- Vasey B, et al. [DECIDE-AI](https://doi.org/10.1038/s41591-022-01772-9). - Network accessline 154
- SPIRIT–CONSORT Group. [Published SPIRIT 2025 and CONSORT 2025 statements](https://www.consort-spirit.org/published-statements). - Network accessline 155
- Liu X, et al. [CONSORT-AI](https://doi.org/10.1038/s41591-020-1034-x). - Network accessline 156
- Rivera SC, et al. [SPIRIT-AI](https://doi.org/10.1038/s41591-020-1037-7). - Network accessline 157
- FDA. [Predetermined Change Control Plan guidance for AI-enabled device software functions](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-art
radiology-skills/skills/radiology-translation/references/deployment-interoperability-and-site-acceptance.md
- Network accessline 54
- DICOM. [PS3.2 Conformance](https://dicom.nema.org/medical/dicom/current/output/chtml/part02/chapter_1.html) - Network accessline 55
and [interoperability remarks](https://dicom.nema.org/medical/dicom/current/output/chtml/part02/sect_n.3.3.html) - Network accessline 56
(current page checked 2026-08-23). - IHE. [Radiology Technical Framework and profiles](https://profiles.ihe.net/RAD/) (profile status snapshot checked 2026-08-23). - Network accessline 57
- IHE. [Radiology Technical Framework and profiles](https://profiles.ihe.net/RAD/) (profile status - Network accessline 59
- DICOM. [Current standard](https://www.dicomstandard.org/current/).
radiology-skills/skills/radiology-translation/references/evidence-state-and-translation-lifecycle.md
- Network accessline 73
- IMDRF [N41 SaMD Clinical Evaluation](https://www.imdrf.org/documents/software-medical-device-samd-clinical-evaluation), - Network accessline 74
final 2017, official status verified 2026-08-23. - IMDRF [N88 GMLP](https://www.imdrf.org/documents/good-machine-learning-practice-medical-device-development-guiding-principles), final 2025, official status verified 2026-08-23. - Network accessline 75
- IMDRF [N88 GMLP](https://www.imdrf.org/documents/good-machine-learning-practice-medical-device-development-guiding-principles), - Network accessline 76
final 2025, official status verified 2026-08-23. - FDA [AI-enabled device lifecycle and marketing-submission recommendations](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/artificial-intelligence-enabled-device-so - Network accessline 77
- FDA [AI-enabled device lifecycle and marketing-submission recommendations](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/artificial-intelligence-enabled-device-software-functions-lifecycle-management-and-marketi - Network accessline 78
**draft, not for implementation** as verified 2026-08-23. - FDA [PCCP guidance](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-artificial-intel - Network accessline 79
- FDA [PCCP guidance](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-artificial-intelligence),
radiology-skills/skills/radiology-translation/references/human-factors-and-implementation.md
- Network accessline 148
- FDA. [Applying Human Factors and Usability Engineering to Medical Devices](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/applying-human-factors-and-usability-engineering-medical-devices). - Network accessline 149
- Vasey B, et al. [DECIDE-AI](https://doi.org/10.1038/s41591-022-01772-9). - Network accessline 150
- NIST. [AI Risk Management Framework](https://www.nist.gov/itl/ai-risk-management-framework). - Network accessline 151
- FDA. [Predetermined Change Control Plan guidance for AI-enabled device software functions](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-art
radiology-skills/skills/radiology-translation/references/implementation-science-and-scale-up.md
- Network accessline 77
- Damschroder LJ, et al. [CFIR outcomes addendum / updated framework](https://doi.org/10.1186/s13012-022-01245-0). - Network accessline 78
- [RE-AIM and PRISM official site](https://re-aim.org/) (framework roles verified 2026-08-23). - Network accessline 79
- Proctor EK, et al. [Implementation outcomes framework](https://doi.org/10.1007/s10488-010-0319-7). - Network accessline 80
- Powell BJ, et al. [ERIC strategy compilation](https://implementationscience.biomedcentral.com/articles/10.1186/s13012-015-0209-1). - Network accessline 81
- Pinnock H, et al. [StaRI statement](https://doi.org/10.1136/bmj.i6795).
radiology-skills/skills/radiology-translation/references/production-monitoring-and-change-control.md
- Network accessline 60
- FDA. [Methods and tools for effective postmarket AI monitoring](https://www.fda.gov/medical-devices/medical-device-regulatory-science-research-programs-conducted-osel/methods-and-tools-effective-postmarket-monitoring-artificial-intelligen - Network accessline 61
(official regulatory-science program checked 2026-08-23; not itself an authorization). - FDA. [PCCP final guidance](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined- - Network accessline 62
- FDA. [PCCP final guidance](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-artificial-intelligence) - Network accessline 63
(final August 2025, checked 2026-08-23). - FDA. [QMSR](https://www.fda.gov/medical-devices/postmarket-requirements-devices/quality-management-system-regulation-qmsr) (official page states effective 2026-02-02; checked 2026-08-23). - Network accessline 64
- FDA. [QMSR](https://www.fda.gov/medical-devices/postmarket-requirements-devices/quality-management-system-regulation-qmsr)
radiology-skills/skills/radiology-translation/references/reader-study.md
- Network accessline 66
[FDA iMRMC research tool](https://cdrh-rst.fda.gov/imrmc-software-do-multi-reader-multi-case-statistical-analysis-reader-studies)
radiology-skills/skills/radiology-translation/references/regulatory-and-deployment-readiness.md
- Network accessline 121
- [IMDRF N41 SaMD Clinical Evaluation](https://www.imdrf.org/documents/software-medical-device-samd-clinical-evaluation) - Network accessline 122
- [IMDRF N88 GMLP](https://www.imdrf.org/documents/good-machine-learning-practice-medical-device-development-guiding-principles) - Network accessline 123
- [FDA AI-enabled device lifecycle draft](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/artificial-intelligence-enabled-device-software-functions-lifecycle-management-and-marketing) - Network accessline 124
- [FDA PCCP final guidance](https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-artificial-intelligence) - Network accessline 125
- [FDA QMSR](https://www.fda.gov/medical-devices/postmarket-requirements-devices/quality-management-system-regulation-qmsr)
radiology-skills/skills/radiology-translation/references/source-registry.md
- Network accessline 7
| Source | Official URL | Version/status | Accessed | Claim use | |---|---|---|---|---| | FDA iMRMC research tool | https://cdrh-rst.fda.gov/imrmc-software-do-multi-reader-multi-case-statistical-analysis-reader-studies | official research-t - Network accessline 8
|---|---|---|---|---| | FDA iMRMC research tool | https://cdrh-rst.fda.gov/imrmc-software-do-multi-reader-multi-case-statistical-analysis-reader-studies | official research-tool page; fully and non-fully-crossed designs, sizing and endpoint - Network accessline 9
| FDA iMRMC research tool | https://cdrh-rst.fda.gov/imrmc-software-do-multi-reader-multi-case-statistical-analysis-reader-studies | official research-tool page; fully and non-fully-crossed designs, sizing and endpoint-specific functions de - Network accessline 10
| FDA AI-enabled device software lifecycle draft guidance | https://www.fda.gov/regulatory-information/search-fda-guidance-documents/artificial-intelligence-enabled-device-software-functions-lifecycle-management-and-marketing | January 2025 - Network accessline 11
| FDA AI PCCP final guidance | https://www.fda.gov/regulatory-information/search-fda-guidance-documents/marketing-submission-recommendations-predetermined-change-control-plan-artificial-intelligence | August 2025 final guidance | 2026-08-23 - Network accessline 12
| FDA QMSR | https://www.fda.gov/medical-devices/postmarket-requirements-devices/quality-management-system-regulation-qmsr | effective 2026-02-02 | 2026-08-23 | current US quality-system status; applicability and compliance remain qualified - Network accessline 13
| FDA AI postmarket monitoring research programme | https://www.fda.gov/medical-devices/medical-device-regulatory-science-research-programs-conducted-osel/methods-and-tools-effective-postmarket-monitoring-artificial-intelligence-ai-enabled- - Network accessline 14
| IMDRF SaMD clinical evaluation N41 | https://www.imdrf.org/documents/software-medical-device-samd-clinical-evaluation | final 2017 | 2026-08-23 | valid clinical association, analytical/technical validation and clinical validation as disti - Network accessline 15
| IMDRF GMLP N88 | https://www.imdrf.org/documents/good-machine-learning-practice-medical-device-development-guiding-principles | final 2025 | 2026-08-23 | lifecycle-oriented ML principles and multidisciplinary responsibility | - Network accessline 16
| DICOM current standard | https://www.dicomstandard.org/current/ | continuously maintained current edition | 2026-08-23 | conformance statement and object/transaction specifications; conformance does not guarantee interoperability | - Network accessline 17
| DICOM PS3.2 interoperability statement | https://dicom.nema.org/medical/dicom/current/output/chtml/part02/sect_n.3.3.html | current PS3.2 | 2026-08-23 | explicit boundary that DICOM conformance alone does not guarantee interoperability | - Network accessline 18
| IHE Radiology Technical Framework | https://profiles.ihe.net/RAD/ | current published/trial profile index | 2026-08-23 | profile/transaction route for local integration testing; trial status must remain visible | - Network accessline 19
| FDA human factors guidance | https://www.fda.gov/regulatory-information/search-fda-guidance-documents/applying-human-factors-and-usability-engineering-medical-devices | final guidance 2016 | 2026-08-23 | users, use environments, critical - Network accessline 20
| NIST AI RMF 1.0 | https://www.nist.gov/itl/ai-risk-management-framework | voluntary framework 1.0 | 2026-08-23 | governance/map/measure/manage framing; not regulatory approval | - Network accessline 21
| DECIDE-AI | https://doi.org/10.1038/s41591-022-01772-9 | reporting guideline 2022 | 2026-08-23 | early-stage live clinical evaluation reporting and human/workflow context | - Network accessline 22
| CONSORT-AI / SPIRIT-AI | https://www.consort-spirit.org/published-statements | published AI extensions; verify current page | 2026-08-23 | AI trial protocol/reporting route; reporting compliance does not validate design or impact | - Network accessline 23
| RE-AIM | https://re-aim.org/ | current official framework site | 2026-08-23 | reach, effectiveness, adoption, implementation and maintenance; framework use does not prove success | - Network accessline 24
| StaRI | https://www.equator-network.org/reporting-guidelines/stari-statement/ | final reporting guideline | 2026-08-23 | implementation-strategy reporting; not an implementation-effectiveness certificate |
radiology-skills/skills/radiology-translation/scripts/validate_translation_skill.ps1
radiology-skills/skills/radiology-writing/references/cell-jama-wiley-shape.md
- Network accessline 43
Use a clinically readable IMRaD structure and the exact current [Instructions for Authors](https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors) - Network accessline 44
[Instructions for Authors](https://jamanetwork.com/journals/jamanetworkopen/pages/instructions-for-authors)
How the signals fit together
Facts from a static read of the files at the pinned commit. They describe what the code does, not why.
Some files could not be read; the facts below still hold.
Declared and executed: 38 facts
- Contacts www.dicomstandard.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-acquisition-qc/scripts/validate_acquisition_qc_skill.ps1:111High confidence
- Contacts qibawiki.rsna.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-acquisition-qc/scripts/validate_acquisition_qc_skill.ps1:112High confidence
- Contacts doi.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-acquisition-qc/scripts/validate_acquisition_qc_skill.ps1:113High confidence
- Contacts www.acr.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-acquisition-qc/scripts/validate_acquisition_qc_skill.ps1:117High confidence
- Contacts www-pub.iaea.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-acquisition-qc/scripts/validate_acquisition_qc_skill.ps1:118High confidence
- Contacts support.crossref.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:40High confidence
- Contacts www.crossref.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:41High confidence
- Contacts help.openalex.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:42High confidence
- Contacts info.orcid.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:43High confidence
- Contacts ror.readme.io, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:44High confidence
- Contacts traditional.leidenranking.com, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:45High confidence
- Contacts doi.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:46High confidence
- Contacts sfdora.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:47High confidence
- Contacts www.vosviewer.com, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:48High confidence
- Contacts icite.od.nih.gov, which SKILL.md, the README and the plugin manifest do not mentionradiology-bibliometrics/scripts/validate_bibliometrics_skill.ps1:49High confidence
- Contacts www.acr.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:74High confidence
- Contacts www.iaslc.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:75High confidence
- Contacts ascopubs.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:76High confidence
- Contacts www.jacc.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:80High confidence
- Contacts skeletalrad.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:82High confidence
- Contacts www.fda.gov, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:83High confidence
- Contacts eanm.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-clinical-domain/scripts/validate_clinical_domain_skill.ps1:84High confidence
- Contacts www.who.int, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:66High confidence
- Contacts www.bmj.com, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:67High confidence
- Contacts www.nice.org.uk, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:68High confidence
- Contacts www.rand.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:69High confidence
- Contacts doi.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:70High confidence
- Contacts www.acr.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:72High confidence
- Contacts cs.acr.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-consensus-guideline/scripts/validate_consensus_guideline_skill.ps1:73High confidence
- Contacts www.rsna.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:56High confidence
- Contacts www.nih.gov, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:57High confidence
- Contacts osp.od.nih.gov, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:58High confidence
- Contacts training.cochrane.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:59High confidence
- Contacts www.who.int, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:60High confidence
- Contacts www.icmje.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:61High confidence
- Contacts www.w3.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:62High confidence
- Contacts dicom.nema.org, which SKILL.md, the README and the plugin manifest do not mentionradiology-dissemination/scripts/validate_dissemination_skill.ps1:63High confidence
- Contacts www.nsfc.gov.cn, which SKILL.md, the README and the plugin manifest do not mentionradiology-grant/scripts/validate_grant_skill.ps1:112High confidence
Signal confidence: 462 facts
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:116Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:117Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:118Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:119Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:120Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:121Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:122Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:123Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:124Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/ct-acquisition-reconstruction.md:125Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/diffusion-tensor-tractography.md:80Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/diffusion-tensor-tractography.md:81Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/diffusion-tensor-tractography.md:82Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/diffusion-tensor-tractography.md:84Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/functional-mri.md:82Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/functional-mri.md:83Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/functional-mri.md:84Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/functional-mri.md:86Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:149Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:150Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:151Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:152Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:153Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:154Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-acquisition-reconstruction.md:155Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-spectroscopy.md:86Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-spectroscopy.md:87Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-spectroscopy.md:88Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/mr-spectroscopy.md:90Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:134Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:135Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:136Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:137Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:138Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:139Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:140Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:141Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:142Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:143Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/pet-spect-acquisition-quantification.md:145Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:183Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:184Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:185Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:186Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:187Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:188Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:189Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:190Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:191Low confidence
- Network access in prose of documentationradiology-acquisition-qc/references/phantom-test-retest-protocol-shift.md:192Low confidence
and 412 more
Only the first 500 facts are listed.
Works with
| Agent | Status | Evidence | Install to |
|---|---|---|---|
| Claude Code | Native | Manifest radiology-skills/.claude-plugin/plugin.json | .claude/skills/<skill-name>/ |
| Codex | Compatible | Standard SKILL.md radiology-skills/skills/radiology-acquisition-qc/SKILL.md | .agents/skills/<skill-name>/ |
| Cursor | Compatible | Standard SKILL.md radiology-skills/skills/radiology-acquisition-qc/SKILL.md | .cursor/skills/<skill-name>/ |
| Gemini CLI | Compatible | Standard SKILL.md radiology-skills/skills/radiology-acquisition-qc/SKILL.md | .gemini/skills/<skill-name>/ |
| GitHub Copilot | Compatible | Standard SKILL.md radiology-skills/skills/radiology-acquisition-qc/SKILL.md | .github/skills/<skill-name>/ |
| OpenCode | Compatible | Standard SKILL.md radiology-skills/skills/radiology-acquisition-qc/SKILL.md | .opencode/skills/<skill-name>/ |
- Native The repository ships a manifest, folder or frontmatter field for this agent.
- Compatible A standard SKILL.md that this agent can read.
- Unknown No evidence either way.
Derived automatically from paths, manifests and frontmatter. Not tested on each agent.
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