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dekan-aleksandr/biodiscovery-skills

Thinking tools for AI agents making discoveries in the life sciences

History

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skills/discovery-director/SKILL.md

Week of Nov 2, 2026 · +0 / −0 lines

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skills/discovery-toolbox/SKILL.md

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View on GitHubAdd to my skills

Verified commit 4ad305c2480f7f01129e0b50e05c2d6288050de4

git clone --filter=blob:none --no-checkout https://github.com/dekan-aleksandr/biodiscovery-skills.git .hotskills/dekan-aleksandr-biodiscovery-skills && git -C .hotskills/dekan-aleksandr-biodiscovery-skills checkout --detach 4ad305c2480f7f01129e0b50e05c2d6288050de4 # Copy each selected skill directory from .hotskills/dekan-aleksandr-biodiscovery-skills into .claude/skills/<skill-name>/
11GitHub stars
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2skills in this repository
0commits in 30 days

Heat

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Individual skills in this repository

How it works

discovery-director

When your agent uses it

Operate as a research director making original discoveries from a given biological question and dataset. Use when the task is open-ended scientific research, exploring omics or experimental data for findings, hypothesis generation and testing, screening a large candidate space of genes, variants, features or compounds, investigating an anomaly, or deciding what experiment or analysis to run next. Triggers on "make discoveries", "explore this data", "find something in", "what's in this dataset", "research this question", "generate hypotheses", "why is this result happening".

What it loads into context

Frontmatter

122 tokens

Always available to the agent

SKILL.md

2,092 tokens

When the skill is activated

Reference documents

0 tokens

Loaded on request

Token counts are estimates. Scripts run separately; they are not counted as reference context.

The playbook

  1. ARCHITECTURE
  2. CAPABILITY CALIBRATION
  3. SEE THE EVIDENCE
  4. BOUNDARY
  5. DISCOVERY MODES
  6. OPERATING PRINCIPLES

Files

  • ../../.claude-plugin/marketplace.jsonasset271 bytes
  • ../../.claude-plugin/plugin.jsonasset431 bytes
  • SKILL.mdcore10,383 bytes
  • SKILL.mdcore10,383 bytes
  • SKILL.mdcore10,383 bytes
Read SKILL.md

# DISCOVERY MINDSET

**Data is sacred.** Never delete source data; move replaced material to `old/`.

Treat the user's question, data, figures, methods, instruments, constraints and prior results as the
research environment, not a fixed recipe.

**Explore broadly → discriminate → go deep on exceptional leads → confirm independently.**

Be risk-tolerant. Expect many failed attempts. Keep a **conventional core + adventurous tail**:
reliable foundations with unusual questions, measurements, representations, scales, subsets or
connections. Maintain competing explanations; attach to none.

Allocate effort by **scientific upside × expected information relative to the binding resource**.
View the complete source on GitHub

Skills included

  • discovery-director
  • discovery-toolbox

Repository facts

License
MIT
Created
Aug 7, 2026
Last pushed
Aug 8, 2026
Forks
2
Open issues
0
Project activity
Slowing

Before you install

Instructions only

Automated signals, not a guarantee

Checked Nov 7, 2026

Not fully analyzed: some files were too long, unreadable or missing. This never lowers the level.

Show 3 notes
  • skills/discovery-director/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
  • skills/discovery-director/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
  • skills/discovery-toolbox/SKILL.md:1 Analysis incomplete: Referenced executable target unavailable; not analyzed
  • No broad tool permissions
  • No dangerous shell commands
  • No network access
  • No hidden or obfuscated text
  • No instruction overrides
  • No executable scripts
  • No access to secrets
  • No requests to vote in Hot

How the signals fit together

Facts from a static read of the files at the pinned commit. They describe what the code does, not why.

No combined signals at this commit.

Works with

Agent compatibility, from the files in this repository
AgentStatusEvidenceInstall to
Claude CodeNativeManifest .claude-plugin/marketplace.json.claude/skills/<skill-name>/
CodexCompatibleStandard SKILL.md skills/discovery-director/SKILL.md.agents/skills/<skill-name>/
CursorCompatibleStandard SKILL.md skills/discovery-director/SKILL.md.cursor/skills/<skill-name>/
Gemini CLICompatibleStandard SKILL.md skills/discovery-director/SKILL.md.gemini/skills/<skill-name>/
GitHub CopilotCompatibleStandard SKILL.md skills/discovery-director/SKILL.md.github/skills/<skill-name>/
OpenCodeCompatibleStandard SKILL.md skills/discovery-director/SKILL.md.opencode/skills/<skill-name>/
  • Native The repository ships a manifest, folder or frontmatter field for this agent.
  • Compatible A standard SKILL.md that this agent can read.
  • Unknown No evidence either way.

Derived automatically from paths, manifests and frontmatter. Not tested on each agent.