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dekan-aleksandr/biodiscovery-skills
Thinking tools for AI agents making discoveries in the life sciences
History
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skills/discovery-director/SKILL.md
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skills/discovery-toolbox/SKILL.md
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git clone --filter=blob:none --no-checkout https://github.com/dekan-aleksandr/biodiscovery-skills.git .hotskills/dekan-aleksandr-biodiscovery-skills && git -C .hotskills/dekan-aleksandr-biodiscovery-skills checkout --detach 4ad305c2480f7f01129e0b50e05c2d6288050de4
# Copy each selected skill directory from .hotskills/dekan-aleksandr-biodiscovery-skills into .claude/skills/<skill-name>/Heat
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Individual skills in this repository
- discovery-director
skills/discovery-director - discovery-toolbox
skills/discovery-toolbox
How it works
discovery-director
When your agent uses it
Operate as a research director making original discoveries from a given biological question and dataset. Use when the task is open-ended scientific research, exploring omics or experimental data for findings, hypothesis generation and testing, screening a large candidate space of genes, variants, features or compounds, investigating an anomaly, or deciding what experiment or analysis to run next. Triggers on "make discoveries", "explore this data", "find something in", "what's in this dataset", "research this question", "generate hypotheses", "why is this result happening".
What it loads into context
Frontmatter
122 tokensAlways available to the agent
SKILL.md
2,092 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- ARCHITECTURE
- CAPABILITY CALIBRATION
- SEE THE EVIDENCE
- BOUNDARY
- DISCOVERY MODES
- OPERATING PRINCIPLES
Files
../../.claude-plugin/marketplace.jsonasset271 bytes../../.claude-plugin/plugin.jsonasset431 bytesSKILL.mdcore10,383 bytesSKILL.mdcore10,383 bytesSKILL.mdcore10,383 bytes
Read SKILL.md
# DISCOVERY MINDSET
**Data is sacred.** Never delete source data; move replaced material to `old/`.
Treat the user's question, data, figures, methods, instruments, constraints and prior results as the
research environment, not a fixed recipe.
**Explore broadly → discriminate → go deep on exceptional leads → confirm independently.**
Be risk-tolerant. Expect many failed attempts. Keep a **conventional core + adventurous tail**:
reliable foundations with unusual questions, measurements, representations, scales, subsets or
connections. Maintain competing explanations; attach to none.
Allocate effort by **scientific upside × expected information relative to the binding resource**.View the complete source on GitHubdiscovery-toolbox
When your agent uses it
A routed repertoire of ~90 scientific thinking operators for biological research agents - visual reasoning, detectability and information budgets, search reframing, causal identification, competing explanations, observation and selection processes, pipeline artifact diagnosis, effort allocation, and confirmation hygiene. Use when a screen returns null or weak results, a result looks too good, search has stagnated, a causal claim is being made, an anomaly needs explaining, a pipeline is suspected, or a lead is about to be escalated. Load the smallest relevant section, activate 1-3 operators, then return to the research loop.
What it loads into context
Frontmatter
129 tokensAlways available to the agent
SKILL.md
2,983 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- A · VISUAL REASONING
- B · INSTRUMENT / DETECTABILITY / INFORMATION
- C · SEARCH / REFRAMING
- D · CAUSAL IDENTIFICATION
- E · COMPETING EXPLANATIONS
- F · OBSERVATION / SELECTION PROCESS
- G · PIPELINE / ARTIFACT DIAGNOSIS
- H · ALLOCATION / DEPTH
- I · CONFIRMATION / HYGIENE
- ROUTER
Files
SKILL.mdcore14,277 bytesSKILL.mdcore14,277 bytes
Read SKILL.md
# DISCOVERY TOOLBOX
**Load on demand, never wholesale.** Route to the smallest relevant section. Usually activate
**1–3 operators**, execute them, then return to the research loop.
The toolbox is a repertoire, not a checklist.
---
## A · VISUAL REASONING
**Trigger:** shape, heterogeneity, ranking, trajectories, subsets, or individual observations may matter.
- **RAW + EXTREMES** — inspect representative raw units, argmax/argmin, and matched non-hits.View the complete source on GitHubSkills included
- discovery-director
- discovery-toolbox
Repository facts
- License
- MIT
- Created
- Aug 7, 2026
- Last pushed
- Aug 8, 2026
- Forks
- 2
- Open issues
- 0
- Project activity
- Slowing
Before you install
Instructions onlyAutomated signals, not a guarantee
Checked Nov 7, 2026
Not fully analyzed: some files were too long, unreadable or missing. This never lowers the level.
Show 3 notes
skills/discovery-director/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedskills/discovery-director/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzedskills/discovery-toolbox/SKILL.md:1Analysis incomplete: Referenced executable target unavailable; not analyzed
- No broad tool permissions
- No dangerous shell commands
- No network access
- No hidden or obfuscated text
- No instruction overrides
- No executable scripts
- No access to secrets
- No requests to vote in Hot
How the signals fit together
Facts from a static read of the files at the pinned commit. They describe what the code does, not why.
No combined signals at this commit.
Works with
| Agent | Status | Evidence | Install to |
|---|---|---|---|
| Claude Code | Native | Manifest .claude-plugin/marketplace.json | .claude/skills/<skill-name>/ |
| Codex | Compatible | Standard SKILL.md skills/discovery-director/SKILL.md | .agents/skills/<skill-name>/ |
| Cursor | Compatible | Standard SKILL.md skills/discovery-director/SKILL.md | .cursor/skills/<skill-name>/ |
| Gemini CLI | Compatible | Standard SKILL.md skills/discovery-director/SKILL.md | .gemini/skills/<skill-name>/ |
| GitHub Copilot | Compatible | Standard SKILL.md skills/discovery-director/SKILL.md | .github/skills/<skill-name>/ |
| OpenCode | Compatible | Standard SKILL.md skills/discovery-director/SKILL.md | .opencode/skills/<skill-name>/ |
- Native The repository ships a manifest, folder or frontmatter field for this agent.
- Compatible A standard SKILL.md that this agent can read.
- Unknown No evidence either way.
Derived automatically from paths, manifests and frontmatter. Not tested on each agent.